RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 NFE2L3Q9Y4A8 694 aa16.08■□□□□ 0.16
RNF4-213ENST00000509388 MICAL3Q7RTP6 2002 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 CARNS1A5YM72 827 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 PTGESO14684 152 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 ZC3H11AO75152 810 aaKnown RBP eCLIP16.07■□□□□ 0.16
RNF4-213ENST00000509388 TNNC2P02585 160 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 ALDH2P05091 517 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 CA3P07451 260 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 TMEM191BP0C7N4 346 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 MYOGP15173 224 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 OR1G1P47890 313 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 ALDH7A1P49419 539 aaKnown RBP16.07■□□□□ 0.16
RNF4-213ENST00000509388 VAMP7P51809 220 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 SMAD3P84022 425 aaKnown RBP16.07■□□□□ 0.16
RNF4-213ENST00000509388 TUSC3Q13454 348 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 DUOXA2Q1HG44 320 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 LRIT3Q3SXY7 679 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 TCERG1LQ5VWI1 586 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 LRSAM1Q6UWE0 723 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 FRMD5Q7Z6J6 570 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 ANKRD36BP1Q96IX9 119 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 ZMAT2Q96NC0 199 aaKnown RBP16.07■□□□□ 0.16
RNF4-213ENST00000509388 PPP1R10Q96QC0 940 aaKnown RBP16.07■□□□□ 0.16
RNF4-213ENST00000509388 BPIFA3Q9BQP9 254 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 CXCL16Q9H2A7 254 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 THAP9Q9H5L6 903 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 SLC28A3Q9HAS3 691 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 RC3H2Q9HBD1 1191 aaKnown RBP16.07■□□□□ 0.16
RNF4-213ENST00000509388 MRPL42Q9Y6G3 142 aaKnown RBP16.07■□□□□ 0.16
RNF4-213ENST00000509388 TTC3P53804 2025 aa16.07■□□□□ 0.16
RNF4-213ENST00000509388 MEFVO15553 781 aaPredicted RBP16.06■□□□□ 0.16
RNF4-213ENST00000509388 STX10O60499 249 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 DDHD2O94830 711 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 NFICP08651 508 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 LAG3P18627 525 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 CYP3A5P20815 502 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 PBX2P40425 430 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 AP3M2P53677 418 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 TPM4P67936 248 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 BFSP1Q12934 665 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 DCAF17Q5H9S7 520 aaPredicted RBP16.06■□□□□ 0.16
RNF4-213ENST00000509388 ZNF280BQ86YH2 543 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 WDR49Q8IV35 697 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 AOPEPQ8N6M6 819 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 SP7Q8TDD2 431 aaPredicted RBP16.06■□□□□ 0.16
RNF4-213ENST00000509388 TMC2Q8TDI7 906 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 PARD3BQ8TEW8 1205 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 DDX27Q96GQ7 796 aaKnown RBP16.06■□□□□ 0.16
RNF4-213ENST00000509388 UROC1Q96N76 676 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 MED15Q96RN5 788 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 CGRRF1Q99675 332 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 TMEM175Q9BSA9 504 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 NKX2-4Q9H2Z4 354 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 NRDE2Q9H7Z3 1164 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 PLAGL2Q9UPG8 496 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 RWDD3Q9Y3V2 267 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 PCDHB12Q9Y5F1 795 aa16.06■□□□□ 0.16
RNF4-213ENST00000509388 LCHNA4D1U4 455 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 LINC01553A4QN01 128 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 CASTOR2A6NHX0 329 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 PHACTR2O75167 634 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 CDK11BP21127 795 aaKnown RBP16.05■□□□□ 0.16
RNF4-213ENST00000509388 MTIF2P46199 727 aaKnown RBP16.05■□□□□ 0.16
RNF4-213ENST00000509388 ENPEPQ07075 957 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 PPP2R2DQ66LE6 453 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 LMBRD2Q68DH5 695 aaPredicted RBP16.05■□□□□ 0.16
RNF4-213ENST00000509388 ANKRD20A12PQ8NF67 263 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 C18orf25Q96B23 403 aaPredicted RBP16.05■□□□□ 0.16
RNF4-213ENST00000509388 TIFAQ96CG3 184 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 ZNF558Q96NG5 402 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 POP1Q99575 1024 aaKnown RBP16.05■□□□□ 0.16
RNF4-213ENST00000509388 COLEC11Q9BWP8 271 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 MMRN2Q9H8L6 949 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 INTS13Q9NVM9 706 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 DPP3Q9NY33 737 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 FAN1Q9Y2M0 1017 aa16.05■□□□□ 0.16
RNF4-213ENST00000509388 YBX2Q9Y2T7 364 aaKnown RBP16.05■□□□□ 0.16
RNF4-213ENST00000509388 LRRIQ3A6PVS8 624 aaPredicted RBP16.04■□□□□ 0.16
RNF4-213ENST00000509388 GOLGA6L19H0YKK7 550 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 IKBKBO14920 756 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 CLSTN1O94985 981 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 TPM2P07951 284 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 KRT19P08727 400 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 DNAJB2P25686 324 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 RPL9P32969 192 aaKnown RBP16.04■□□□□ 0.16
RNF4-213ENST00000509388 WNT7BP56706 349 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 BCAR1P56945 870 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 ZNF445P59923 1031 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 DSC1Q08554 894 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 BIRC3Q13489 604 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 ZBTB6Q15916 424 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 HSP90AA4PQ58FG1 418 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 KCNT2Q6UVM3 1135 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 EFCAB13Q8IY85 973 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 COLGALT2Q8IYK4 626 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 CNOT6LQ96LI5 555 aaKnown RBP16.04■□□□□ 0.16
RNF4-213ENST00000509388 SAMD11Q96NU1 681 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 MTMR12Q9C0I1 747 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 CWH43Q9H720 699 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 SAMSN1Q9NSI8 373 aaKnown RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms