RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 GPR152Q8TDT2 470 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 DDX27Q96GQ7 796 aaKnown RBP12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 DRC1Q96MC2 740 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 ACO2Q99798 780 aaKnown RBP12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 RTP3Q9BQQ7 232 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 MMTAG2Q9BU76 263 aaKnown RBP12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 TARS2Q9BW92 718 aaKnown RBP12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 MRPL4Q9BYD3 311 aaKnown RBP12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 TMEM134Q9H6X4 195 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 KMT5AQ9NQR1 393 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 TOPORSQ9NS56 1045 aaPredicted RBP12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 ARHGAP28Q9P2N2 729 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 MTRRQ9UBK8 725 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 DAXXQ9UER7 740 aaPredicted RBP12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 POLIQ9UNA4 740 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 NUMBLQ9Y6R0 609 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 SMIM28A0A1B0GU29 152 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 SLC16A4O15374 487 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 XYLBO75191 536 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 OR1D2P34982 312 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 BRCC3P46736 316 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 ZRSR1Q15695 479 aaKnown RBP12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 UPP1Q16831 310 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 AXDND1Q5T1B0 1012 aaPredicted RBP12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 MCTP1Q6DN14 999 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 RSPO2Q6UXX9 243 aaPredicted RBP12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 C1orf186Q6ZWK4 172 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 ASCL5Q7RTU5 278 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 FRMD5Q7Z6J6 570 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 DTWD2Q8NBA8 298 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 TBC1D17Q9HA65 648 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 PTPRHQ9HD43 1115 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 CDH7Q9ULB5 785 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 CDY1Q9Y6F8 540 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 ZFP37Q9Y6Q3 630 aaPredicted RBP12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 COL4A3Q01955 1670 aa12.66□□□□□ -0.38
HMGCS1-204ENST00000507293 PRR23AA6NEV1 266 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 SFI1A8K8P3 1242 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 ABLIM1O14639 778 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 TRAPPC3O43617 180 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 MCF2P10911 925 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 HARSP12081 509 aaKnown RBP12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 PROZP22891 400 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 ATP2C1P98194 919 aaPredicted RBP12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 RABEP1Q15276 862 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 ANGPT1Q15389 498 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 XKR4Q5GH76 650 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 MPZL3Q6UWV2 235 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 ALKAL1Q6UXT8 129 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 ANKS3Q6ZW76 656 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 ITFG1Q8TB96 612 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 FGF13Q92913 245 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 FGF14Q92915 247 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 SNX27Q96L92 541 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 ZMAT2Q96NC0 199 aaKnown RBP12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 PNMA5Q96PV4 448 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 TCHPQ9BT92 498 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 RPP25Q9BUL9 199 aaKnown RBP12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 C17orf75Q9HAS0 396 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 ARHGEF3Q9NR81 526 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 SLC2A4RGQ9NR83 387 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 SLC38A7Q9NVC3 462 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 HCFC1R1Q9NWW0 138 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 KIF3AQ9Y496 699 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 BACE2Q9Y5Z0 518 aa12.65□□□□□ -0.38
HMGCS1-204ENST00000507293 PATJQ8NI35 1801 aa12.65□□□□□ -0.39
HMGCS1-204ENST00000507293 PODXLO00592 558 aa12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 POU2F2P09086 479 aa12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 GUCY2CP25092 1073 aa12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 RAD51AP2Q09MP3 1159 aa12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 RILPL1Q5EBL4 403 aa12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 HYIQ5T013 277 aa12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 PARM1Q6UWI2 310 aa12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 NKD2Q969F2 451 aaPredicted RBP12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 ZBTB45Q96K62 511 aaPredicted RBP12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 ACAP3Q96P50 834 aa12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 PLIN2Q99541 437 aa12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 TIPINQ9BVW5 301 aa12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 ANKFY1Q9P2R3 1169 aa12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 DNMT3BQ9UBC3 853 aaKnown RBP12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 RBM19Q9Y4C8 960 aaKnown RBP12.64□□□□□ -0.39
HMGCS1-204ENST00000507293 FANCMQ8IYD8 2048 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 VWA3AA6NCI4 1184 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 MEFVO15553 781 aaPredicted RBP12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 PLS3P13797 630 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 KCNE1P15382 129 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 GPC5P78333 572 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 ROR1Q01973 937 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 STRN3Q13033 797 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 UVSSAQ2YD98 709 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 PABPC1LQ4VXU2 614 aaKnown RBP12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 SPECC1Q5M775 1068 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 VARS2Q5ST30 1063 aaKnown RBP12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 PHLDB3Q6NSJ2 640 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 MTSS1LQ765P7 747 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 NPAS3Q8IXF0 933 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 ING5Q8WYH8 240 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 C18orf25Q96B23 403 aaPredicted RBP12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 TMX3Q96JJ7 454 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms