RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 ARSHQ5FYA8 562 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 CDCA2Q69YH5 1023 aaPredicted RBP7.45□□□□□ -1.22
VPS52-219ENST00000493379 TMEM214Q6NUQ4 689 aaKnown RBP7.45□□□□□ -1.22
VPS52-219ENST00000493379 SHC4Q6S5L8 630 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 SRGAP1Q7Z6B7 1085 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 CABP7Q86V35 215 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 ETFBKMTQ8IXQ9 262 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 DAW1Q8N136 415 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 LRRC71Q8N4P6 559 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 METTL13Q8N6R0 699 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 TMEM105Q8N8V8 129 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 PSPC1Q8WXF1 523 aaKnown RBP7.45□□□□□ -1.22
VPS52-219ENST00000493379 SEPT8Q92599 483 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 TOP1MTQ969P6 601 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 CLIC6Q96NY7 704 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 MAP7D2Q96T17 732 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 SH2D3AQ9BRG2 576 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 PHACTR1Q9C0D0 580 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 GRIP2Q9C0E4 1043 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 SCAND2PQ9GZW5 306 aaPredicted RBP7.45□□□□□ -1.22
VPS52-219ENST00000493379 FAM49AQ9H0Q0 323 aaPredicted RBP7.45□□□□□ -1.22
VPS52-219ENST00000493379 BHMT2Q9H2M3 363 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 TMX1Q9H3N1 280 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 SUGCTQ9HAC7 445 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 ATP6V0A4Q9HBG4 840 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 CHST12Q9NRB3 414 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 STK17AQ9UEE5 414 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 KCNG1Q9UIX4 513 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 PADI3Q9ULW8 664 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 PCDHA7Q9UN72 937 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 NOC2LQ9Y3T9 749 aaKnown RBP7.45□□□□□ -1.22
VPS52-219ENST00000493379 COL4A3BPQ9Y5P4 624 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 KAT6AQ92794 2004 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 TET1Q8NFU7 2136 aa7.45□□□□□ -1.22
VPS52-219ENST00000493379 SCN5AQ14524 2016 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 A0A087WWV3 80 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 A0A087WZ62 844 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 A0A087X0B3 334 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 A0A1W2PQ27 194 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 A0A1W2PQ64 194 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 A0A1W2PQD8 194 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 C9IYK1 514 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 RBAK-RBAKDNI3L0D1 243 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 ZNF623O75123 536 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 VTNP04004 478 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 GHRP10912 638 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 SCP2P22307 547 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 GLRA2P23416 452 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 CMA1P23946 247 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 HOXA11P31270 313 aaPredicted RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 RNF144AP50876 292 aaPredicted RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 POLGP54098 1239 aaPredicted RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 WDR5P61964 334 aaKnown RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 KRT85P78386 507 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 HTRA4P83105 476 aaPredicted RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 PRR20EP86478 221 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 PRR20CP86479 221 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 PRR20DP86480 221 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 PRR20BP86481 221 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 PRR20AP86496 221 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 STK38Q15208 465 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 KIZQ2M2Z5 673 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 RESP18Q5W5W9 173 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 TRMT1LQ7Z2T5 733 aaKnown RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 DEFB128Q7Z7B8 93 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 FAM228AQ86W67 206 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 ATCAYQ86WG3 371 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 LEO1Q8WVC0 666 aaPredicted RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 KIFAP3Q92845 792 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 HPS1Q92902 700 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 TMEM143Q96AN5 459 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 ZNF689Q96CS4 500 aaPredicted RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 CALML4Q96GE6 196 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 SLC9A7Q96T83 725 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 FDXACB1Q9BRP7 624 aaPredicted RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 IFIH1Q9BYX4 1025 aaKnown RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 GCOM2Q9BZD3 368 aaPredicted RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 FZD8Q9H461 694 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 CUEDC2Q9H467 287 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 ELAC1Q9H777 363 aaKnown RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 RC3H2Q9HBD1 1191 aaKnown RBP7.44□□□□□ -1.22
VPS52-219ENST00000493379 RGS18Q9NS28 235 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 KBTBD4Q9NVX7 518 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 ST3GAL5Q9UNP4 418 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 HPSEQ9Y251 543 aa7.44□□□□□ -1.22
VPS52-219ENST00000493379 IGF2RP11717 2491 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 A0A0U1RQF3 1178 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 A0A1B0GUA9 196 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 FRMD3A2A2Y4 597 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 ARHGEF35A5YM69 484 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 MGEA5O60502 916 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 RPS6KA5O75582 802 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 CTSHP09668 335 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 PLA2G4BP0C869 781 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 PLCG1P19174 1290 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 AXLP30530 894 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 CD52P31358 61 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 NAMPTP43490 491 aa7.43□□□□□ -1.22
VPS52-219ENST00000493379 CEBPZQ03701 1054 aaKnown RBP7.43□□□□□ -1.22
VPS52-219ENST00000493379 SIGLEC14Q08ET2 396 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms