RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 BMP2KLQ5H9B9 411 aa17.91■□□□□ 0.46
USP48-210ENST00000489108 NEK8Q86SG6 692 aa17.91■□□□□ 0.46
USP48-210ENST00000489108 FAM3CQ92520 227 aa17.91■□□□□ 0.46
USP48-210ENST00000489108 AVENQ9NQS1 362 aaPredicted RBP17.91■□□□□ 0.46
USP48-210ENST00000489108 MTRRQ9UBK8 725 aa17.91■□□□□ 0.46
USP48-210ENST00000489108 A0A087WWV3 80 aa17.9■□□□□ 0.46
USP48-210ENST00000489108 TTLL13PA6NNM8 815 aa17.9■□□□□ 0.46
USP48-210ENST00000489108 TBX3O15119 743 aa17.9■□□□□ 0.46
USP48-210ENST00000489108 DGAT1O75907 488 aa17.9■□□□□ 0.46
USP48-210ENST00000489108 CCR3P51677 355 aa17.9■□□□□ 0.46
USP48-210ENST00000489108 SATB1Q01826 763 aa17.9■□□□□ 0.46
USP48-210ENST00000489108 SRSF5Q13243 272 aaKnown RBP17.9■□□□□ 0.46
USP48-210ENST00000489108 FAM78AQ5JUQ0 283 aa17.9■□□□□ 0.46
USP48-210ENST00000489108 SKAP1Q86WV1 359 aa17.9■□□□□ 0.46
USP48-210ENST00000489108 TCEAL4Q96EI5 215 aa17.9■□□□□ 0.46
USP48-210ENST00000489108 YTHDC1Q96MU7 727 aaKnown RBP17.9■□□□□ 0.46
USP48-210ENST00000489108 TRMT61BQ9BVS5 477 aaKnown RBP17.9■□□□□ 0.46
USP48-210ENST00000489108 ZFP14Q9HCL3 533 aa17.9■□□□□ 0.46
USP48-210ENST00000489108 CCDC194A0A1B0GVG4 234 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 CHURC1-FNTBB4DL54 471 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 RECQL4O94761 1208 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 GCFC2P16383 781 aaKnown RBP17.89■□□□□ 0.45
USP48-210ENST00000489108 CXCL12P48061 93 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 FNTBP49356 437 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 DMWDQ09019 674 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 PRSS36Q5K4E3 855 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 POTEDQ86YR6 584 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 MAP4K3Q8IVH8 894 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 EIF2AK1Q9BQI3 630 aaKnown RBP17.89■□□□□ 0.45
USP48-210ENST00000489108 CORO1BQ9BR76 489 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 IER2Q9BTL4 223 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 POLR3FQ9H1D9 316 aaPredicted RBP17.89■□□□□ 0.45
USP48-210ENST00000489108 ZNF334Q9HCZ1 680 aaPredicted RBP17.89■□□□□ 0.45
USP48-210ENST00000489108 ANKEF1Q9NU02 776 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 BACE2Q9Y5Z0 518 aa17.89■□□□□ 0.45
USP48-210ENST00000489108 CNOT1A5YKK6 2376 aaKnown RBP17.89■□□□□ 0.45
USP48-210ENST00000489108 TICRRQ7Z2Z1 1910 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 LRRIQ4A6NIV6 560 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 LRG1P02750 347 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 TKTP29401 623 aaKnown RBP17.88■□□□□ 0.45
USP48-210ENST00000489108 GDI1P31150 447 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 HSPA4P34932 840 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 GAS6Q14393 721 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 CD300LGQ6UXG3 332 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 PPP4R3CPQ6ZMV5 832 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 MAEAQ7L5Y9 396 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 NOSTRINQ8IVI9 506 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 IRF7Q92985 503 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 HSD17B14Q9BPX1 270 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 FZD8Q9H461 694 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 PDZD7Q9H5P4 517 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 PRMT7Q9NVM4 692 aaPredicted RBP17.88■□□□□ 0.45
USP48-210ENST00000489108 ANGPTL2Q9UKU9 493 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 USP20Q9Y2K6 914 aa17.88■□□□□ 0.45
USP48-210ENST00000489108 ARHGEF37A1IGU5 675 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 I3L4J1 428 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 CPLX1O14810 134 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 B3GAT3O94766 335 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 LYPLA2O95372 231 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 BAG4O95429 457 aaKnown RBP17.87■□□□□ 0.45
USP48-210ENST00000489108 CHRNB1P11230 501 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 RARRES1P49788 294 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 N4BP2L1Q5TBK1 243 aaPredicted RBP17.87■□□□□ 0.45
USP48-210ENST00000489108 VITQ6UXI7 678 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 PIK3AP1Q6ZUJ8 805 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.87■□□□□ 0.45
USP48-210ENST00000489108 FAM177A1Q8N128 213 aaPredicted RBP17.87■□□□□ 0.45
USP48-210ENST00000489108 ZNF461Q8TAF7 563 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 PIGOQ8TEQ8 1089 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 DDX27Q96GQ7 796 aaKnown RBP17.87■□□□□ 0.45
USP48-210ENST00000489108 PRIMPOLQ96LW4 560 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 ZSWIM3Q96MP5 696 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 ASB16Q96NS5 453 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 LARP6Q9BRS8 491 aaKnown RBP17.87■□□□□ 0.45
USP48-210ENST00000489108 GPRC5CQ9NQ84 441 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 TRPV5Q9NQA5 729 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 PIAS3Q9Y6X2 628 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 TRIP11Q15643 1979 aa17.87■□□□□ 0.45
USP48-210ENST00000489108 COL4A2P08572 1712 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 PRRG1O14668 218 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 N4BP3O15049 544 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 PSMC3P17980 439 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 CCNE1P24864 410 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 ELF1P32519 619 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 VIPR2P41587 438 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 CCR2P41597 374 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 BRCC3P46736 316 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 CLCNKBP51801 687 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 ROR1Q01973 937 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 TOB2Q14106 344 aaPredicted RBP17.86■□□□□ 0.45
USP48-210ENST00000489108 FAM187BQ17R55 369 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 TMEM132AQ24JP5 1023 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 ANKS3Q6ZW76 656 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 SLFN12Q8IYM2 578 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 OXER1Q8TDS5 423 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 DDX1Q92499 740 aaKnown RBP17.86■□□□□ 0.45
USP48-210ENST00000489108 CCDC43Q96MW1 224 aaKnown RBP17.86■□□□□ 0.45
USP48-210ENST00000489108 GDAQ9Y2T3 454 aa17.86■□□□□ 0.45
USP48-210ENST00000489108 WDR27A2RRH5 827 aa17.85■□□□□ 0.45
USP48-210ENST00000489108 TMEM189-UBE2V1I3L0A0 370 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms