RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 RECQL4O94761 1208 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 GJB5O95377 273 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 ATF7P17544 494 aaPredicted RBP11.19□□□□□ -0.62
SKA1-204ENST00000488454 NR2F2P24468 414 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 ERCC5P28715 1186 aaPredicted RBP11.19□□□□□ -0.62
SKA1-204ENST00000488454 CLCN1P35523 988 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 STX17P56962 302 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 RNASELQ05823 741 aaKnown RBP11.19□□□□□ -0.62
SKA1-204ENST00000488454 PPP2R3AQ06190 1150 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 TYRO3Q06418 890 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 NFIL3Q16649 462 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 DPCR1Q3MIW9 517 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 NOMO2Q5JPE7 1267 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 SPOUT1Q5T280 376 aaKnown RBP11.19□□□□□ -0.62
SKA1-204ENST00000488454 BLOC1S3Q6QNY0 202 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 TMCO2Q7Z6W1 182 aaPredicted RBP11.19□□□□□ -0.62
SKA1-204ENST00000488454 CD302Q8IX05 232 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 CEP120Q8N960 986 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 HELQQ8TDG4 1101 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 TMEM174Q8WUU8 243 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 FAM193BQ96PV7 902 aaPredicted RBP11.19□□□□□ -0.62
SKA1-204ENST00000488454 GAD1Q99259 594 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 ANP32EQ9BTT0 268 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 TMUB1Q9BVT8 246 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 GZF1Q9H116 711 aaPredicted RBP11.19□□□□□ -0.62
SKA1-204ENST00000488454 DMAC2Q9NW81 257 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 RBAKQ9NYW8 714 aaPredicted RBP11.19□□□□□ -0.62
SKA1-204ENST00000488454 MSRAQ9UJ68 235 aa11.19□□□□□ -0.62
SKA1-204ENST00000488454 CPSF3Q9UKF6 684 aaKnown RBP11.19□□□□□ -0.62
SKA1-204ENST00000488454 A0A1W2PPC1 479 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 ARL5CA6NH57 179 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 MEIS3P2A8K0S8 358 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 IL18RAPO95256 599 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 CXCL8P10145 99 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 EPB41P11171 864 aaKnown RBP11.18□□□□□ -0.62
SKA1-204ENST00000488454 PSMC2P35998 433 aaKnown RBP11.18□□□□□ -0.62
SKA1-204ENST00000488454 MLH1P40692 756 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 TNFSF9P41273 254 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 BTG3Q14201 252 aaPredicted RBP11.18□□□□□ -0.62
SKA1-204ENST00000488454 SURF1Q15526 300 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 SNRNP35Q16560 246 aaKnown RBP11.18□□□□□ -0.62
SKA1-204ENST00000488454 SLC10A6Q3KNW5 377 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 FOXR2Q6PJQ5 311 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 USP37Q86T82 979 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 TMEM192Q8IY95 271 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 CRIPAKQ8N1N5 446 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 CSGALNACT2Q8N6G5 542 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 CEP63Q96MT8 703 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 CASD1Q96PB1 797 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 FNBP1Q96RU3 617 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 TSPAN18Q96SJ8 248 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 MRPL9Q9BYD2 267 aaKnown RBP11.18□□□□□ -0.62
SKA1-204ENST00000488454 LTBP2Q14767 1821 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 TET1Q8NFU7 2136 aa11.18□□□□□ -0.62
SKA1-204ENST00000488454 TRIM49BA6NDI0 452 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 GRXCR1A8MXD5 290 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 LACTBL1A8MY62 500 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 XPOTO43592 962 aaKnown RBP11.17□□□□□ -0.62
SKA1-204ENST00000488454 FAM189A1O60320 539 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 GNA14O95837 355 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 POMCP01189 267 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 THP07101 528 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 KRT13P13646 458 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 GCGRP47871 477 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 RABGGTBP53611 331 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 PMS1P54277 932 aaKnown RBP11.17□□□□□ -0.62
SKA1-204ENST00000488454 HTRA4P83105 476 aaPredicted RBP11.17□□□□□ -0.62
SKA1-204ENST00000488454 RAB30Q15771 203 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 ENOX2Q16206 610 aaKnown RBP11.17□□□□□ -0.62
SKA1-204ENST00000488454 PAN2Q504Q3 1202 aaKnown RBP11.17□□□□□ -0.62
SKA1-204ENST00000488454 ZCWPW2Q504Y3 356 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 CLLU1OSQ5K130 101 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 ZBTB41Q5SVQ8 909 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 TTI2Q6NXR4 508 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 CRELD2Q6UXH1 353 aaPredicted RBP11.17□□□□□ -0.62
SKA1-204ENST00000488454 CBWD2Q8IUF1 395 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 CREBRFQ8IUR6 639 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 FAM186BQ8IYM0 893 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 CMTR2Q8IYT2 770 aaKnown RBP11.17□□□□□ -0.62
SKA1-204ENST00000488454 LRRC43Q8N309 656 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 FIBCD1Q8N539 461 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 CACTINQ8WUQ7 758 aaKnown RBP11.17□□□□□ -0.62
SKA1-204ENST00000488454 SNX27Q96L92 541 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 FBXL18Q96ME1 805 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 SRRTQ9BXP5 876 aaKnown RBP11.17□□□□□ -0.62
SKA1-204ENST00000488454 DNAJC25Q9H1X3 360 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 PRO3102Q9H379 93 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 ASB7Q9H672 318 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 AAASQ9NRG9 546 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 SLC38A7Q9NVC3 462 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 PCDHA11Q9Y5I1 949 aa11.17□□□□□ -0.62
SKA1-204ENST00000488454 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.17□□□□□ -0.62
SKA1-204ENST00000488454 SIP14410 1827 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 SMIM28A0A1B0GU29 152 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 TTC26A0AVF1 554 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 CARNS1A5YM72 827 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 SMTNL1A8MU46 457 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 MAPK13O15264 365 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 CAVIN2O95810 425 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 ALDH2P05091 517 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms