RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 DPF1Q92782 380 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 C8orf37Q96NL8 207 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 KCTD10Q9H3F6 313 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 MS4A5Q9H3V2 200 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 PRDM12Q9H4Q4 367 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 BCO1Q9HAY6 547 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 PRKCGP05129 697 aa4.88□□□□□ -1.63
SMC4-220ENST00000488017 CANXP27824 592 aaKnown RBP4.88□□□□□ -1.63
SMC4-220ENST00000488017 LSSP48449 732 aa4.88□□□□□ -1.63
SMC4-220ENST00000488017 LGALS4P56470 323 aa4.88□□□□□ -1.63
SMC4-220ENST00000488017 SART3Q15020 963 aaKnown RBP4.88□□□□□ -1.63
SMC4-220ENST00000488017 SRSF7Q16629 238 aaKnown RBP eCLIP4.88□□□□□ -1.63
SMC4-220ENST00000488017 MRI1Q9BV20 369 aa4.88□□□□□ -1.63
SMC4-220ENST00000488017 MOCS1Q9NZB8 636 aa4.88□□□□□ -1.63
SMC4-220ENST00000488017 MTO1Q9Y2Z2 717 aaKnown RBP4.88□□□□□ -1.63
SMC4-220ENST00000488017 CCDC78A2IDD5 438 aa4.87□□□□□ -1.63
SMC4-220ENST00000488017 RAB11FIP3O75154 756 aa4.87□□□□□ -1.63
SMC4-220ENST00000488017 ASMTLO95671 621 aa4.87□□□□□ -1.63
SMC4-220ENST00000488017 PTGER1P34995 402 aa4.87□□□□□ -1.63
SMC4-220ENST00000488017 UBXN2BQ14CS0 331 aa4.87□□□□□ -1.63
SMC4-220ENST00000488017 SSH3Q8TE77 659 aa4.87□□□□□ -1.63
SMC4-220ENST00000488017 GPR101Q96P66 508 aaPredicted RBP4.87□□□□□ -1.63
SMC4-220ENST00000488017 CPNE5Q9HCH3 593 aa4.87□□□□□ -1.63
SMC4-220ENST00000488017 SPTLC3Q9NUV7 552 aa4.87□□□□□ -1.63
SMC4-220ENST00000488017 FLRT1Q9NZU1 646 aa4.87□□□□□ -1.63
SMC4-220ENST00000488017 ZNF804BA4D1E1 1349 aa4.87□□□□□ -1.63
SMC4-220ENST00000488017 AATKQ6ZMQ8 1374 aa4.87□□□□□ -1.63
SMC4-220ENST00000488017 FAM83GA6ND36 823 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 MANSC4A6NHS7 340 aaPredicted RBP4.86□□□□□ -1.63
SMC4-220ENST00000488017 MPPED1O15442 326 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 CKBP12277 381 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 IL2RBP14784 551 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 ATP5JP18859 108 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 SCNN1BP51168 640 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 SSBP2P81877 361 aaPredicted RBP4.86□□□□□ -1.63
SMC4-220ENST00000488017 NFE2L2Q16236 605 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 AFMIDQ63HM1 303 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 C11orf74Q86VG3 221 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 GPR156Q8NFN8 814 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 DDB2Q92466 427 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 MED15Q96RN5 788 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 TMEM260Q9NX78 707 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 USP25Q9UHP3 1055 aa4.86□□□□□ -1.63
SMC4-220ENST00000488017 ARHGEF17Q96PE2 2063 aaPredicted RBP4.85□□□□□ -1.63
SMC4-220ENST00000488017 TRGV11A0A075B6L2 103 aa4.85□□□□□ -1.63
SMC4-220ENST00000488017 AKR1B10O60218 316 aa4.85□□□□□ -1.63
SMC4-220ENST00000488017 LPLP06858 475 aa4.85□□□□□ -1.63
SMC4-220ENST00000488017 ITPKBP27987 946 aa4.85□□□□□ -1.63
SMC4-220ENST00000488017 NBPF8Q3BBV2 869 aa4.85□□□□□ -1.63
SMC4-220ENST00000488017 OTUD7BQ6GQQ9 843 aa4.85□□□□□ -1.63
SMC4-220ENST00000488017 C11orf87Q6NUJ2 197 aa4.85□□□□□ -1.63
SMC4-220ENST00000488017 FAM180AQ6UWF9 173 aa4.85□□□□□ -1.63
SMC4-220ENST00000488017 RASSF3Q86WH2 238 aa4.85□□□□□ -1.63
SMC4-220ENST00000488017 PMFBP1Q8TBY8 1022 aa4.85□□□□□ -1.63
SMC4-220ENST00000488017 OSBPL2Q9H1P3 480 aa4.85□□□□□ -1.63
SMC4-220ENST00000488017 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.85□□□□□ -1.63
SMC4-220ENST00000488017 CDK11AQ9UQ88 783 aaPredicted RBP4.85□□□□□ -1.63
SMC4-220ENST00000488017 SIK3Q9Y2K2 1263 aa4.85□□□□□ -1.63
SMC4-220ENST00000488017 YY2O15391 372 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 BMP15O95972 392 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 RAP2AP10114 183 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 SRGNP10124 158 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 ECHS1P30084 290 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 ADSLP30566 484 aaPredicted RBP4.84□□□□□ -1.63
SMC4-220ENST00000488017 GRIA3P42263 894 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 EIF2B5Q13144 721 aaKnown RBP4.84□□□□□ -1.63
SMC4-220ENST00000488017 SF3B3Q15393 1217 aaKnown RBP4.84□□□□□ -1.63
SMC4-220ENST00000488017 GEN1Q17RS7 908 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 BROXQ5VW32 411 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 KAZNQ674X7 775 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 FCRLBQ6BAA4 426 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 VWA1Q6PCB0 445 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 Q6ZVL8 140 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 LRRTM3Q86VH5 581 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 RIN2Q8WYP3 895 aaPredicted RBP4.84□□□□□ -1.63
SMC4-220ENST00000488017 ZBTB9Q96C00 473 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 FCRL4Q96PJ5 515 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 PNKPQ96T60 521 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 NOC2LQ9Y3T9 749 aaKnown RBP4.84□□□□□ -1.63
SMC4-220ENST00000488017 CCDC9Q9Y3X0 531 aaKnown RBP4.84□□□□□ -1.63
SMC4-220ENST00000488017 WNT6Q9Y6F9 365 aa4.84□□□□□ -1.63
SMC4-220ENST00000488017 AOX1Q06278 1338 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 WNT10BO00744 389 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 PROM1O43490 865 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 PRSS23O95084 383 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 SLC6A2P23975 617 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 SREBF1P36956 1147 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 MAPK10P53779 464 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 SLC10A2Q12908 348 aaPredicted RBP4.83□□□□□ -1.64
SMC4-220ENST00000488017 LLGL1Q15334 1064 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 UGT8Q16880 541 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 CT83Q5H943 113 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 PEG10Q86TG7 708 aaKnown RBP4.83□□□□□ -1.64
SMC4-220ENST00000488017 OR2W6PQ8NHA6 318 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 SH3TC2Q8TF17 1288 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 NUP133Q8WUM0 1156 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 RAX2Q96IS3 184 aa4.83□□□□□ -1.64
SMC4-220ENST00000488017 TRIM38O00635 465 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 FKBP9O95302 570 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 IGKV2-30P06310 120 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms