RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 FTLP02792 175 aaPredicted RBP6.87□□□□□ -1.31
USP48-209ENST00000487880 SCNN1GP51170 649 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 SNAPC2Q13487 334 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 GFOD2Q3B7J2 385 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 KHDC1Q4VXA5 237 aaKnown RBP6.87□□□□□ -1.31
USP48-209ENST00000487880 GADL1Q6ZQY3 521 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 SYT12Q8IV01 421 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 DENND1CQ8IV53 801 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 WDR75Q8IWA0 830 aaKnown RBP6.87□□□□□ -1.31
USP48-209ENST00000487880 ZBTB34Q8NCN2 500 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 ZFP28Q8NHY6 868 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 ATXN2LQ8WWM7 1075 aaKnown RBP6.87□□□□□ -1.31
USP48-209ENST00000487880 TFAP2CQ92754 450 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 DVL3Q92997 716 aaPredicted RBP6.87□□□□□ -1.31
USP48-209ENST00000487880 FAM193BQ96PV7 902 aaPredicted RBP6.87□□□□□ -1.31
USP48-209ENST00000487880 VRK1Q99986 396 aaPredicted RBP6.87□□□□□ -1.31
USP48-209ENST00000487880 NDC1Q9BTX1 674 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 GABBR1Q9UBS5 961 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 TESMINQ9Y4I5 508 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 GRXCR1A8MXD5 290 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 VSTM5A8MXK1 200 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 ARIH2O95376 493 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 ZNF20P17024 532 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 ATF3P18847 181 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 HK1P19367 917 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 ACRV1P26436 265 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 HIBADHP31937 336 aaKnown RBP6.86□□□□□ -1.31
USP48-209ENST00000487880 MAN2A2P49641 1150 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 GBX1Q14549 363 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 PRKD1Q15139 912 aaPredicted RBP6.86□□□□□ -1.31
USP48-209ENST00000487880 EFCAB12Q6NXP0 572 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 ZNF529Q6P280 563 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 OVCH2Q7RTZ1 564 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 GSPT2Q8IYD1 628 aaKnown RBP6.86□□□□□ -1.31
USP48-209ENST00000487880 RNF169Q8NCN4 708 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 OR10H5Q8NGA6 315 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 PPP1R35Q8TAP8 253 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 MNTQ99583 582 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 CGRRF1Q99675 332 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 LRFN3Q9BTN0 628 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 GPR87Q9BY21 358 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 MAN1C1Q9NR34 630 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 C1orf112Q9NSG2 853 aa6.86□□□□□ -1.31
USP48-209ENST00000487880 MUSKO15146 869 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 B3GALT2O43825 422 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 UBXN7O94888 489 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 CD1AP06126 327 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 FTH1P19P0C7X4 201 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 MGAT1P26572 445 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 ADAM17P78536 824 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 RRP1BQ14684 758 aaKnown RBP6.85□□□□□ -1.31
USP48-209ENST00000487880 ATP2B3Q16720 1220 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 SPATS1Q496A3 300 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 PABPC1LQ4VXU2 614 aaKnown RBP6.85□□□□□ -1.31
USP48-209ENST00000487880 ATXN7L2Q5T6C5 722 aaPredicted RBP6.85□□□□□ -1.31
USP48-209ENST00000487880 SLC4A10Q6U841 1118 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 IL17RDQ8NFM7 739 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 KRTAP4-11Q9BYQ6 195 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 SPON1Q9HCB6 807 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 FBXO34Q9NWN3 711 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 STXBP5LQ9Y2K9 1186 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 TSC22D4Q9Y3Q8 395 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 PCDHA3Q9Y5H8 950 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 NR2E3Q9Y5X4 410 aa6.85□□□□□ -1.31
USP48-209ENST00000487880 XDHP47989 1333 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 TCRBV7S2A1N4TA0A589 114 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 GOLGA6L6A8MZA4 724 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 F2RL2O00254 374 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 GRM6O15303 877 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 CTNND1O60716 968 aaKnown RBP6.84□□□□□ -1.31
USP48-209ENST00000487880 TUSC2O75896 110 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 POMCP01189 267 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 AMHP03971 560 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 SBK3P0C264 359 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 SLC6A4P31645 630 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 RAP2BP61225 183 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 NKX6-1P78426 367 aaPredicted RBP6.84□□□□□ -1.31
USP48-209ENST00000487880 CREMQ03060 361 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 METRNLQ641Q3 311 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 UBE3BQ7Z3V4 1068 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 HEATR3Q7Z4Q2 680 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 CAMKK1Q8N5S9 505 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 CDK5RAP3Q96JB5 506 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 FAM167AQ96KS9 214 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 CDK5RAP1Q96SZ6 601 aaKnown RBP6.84□□□□□ -1.31
USP48-209ENST00000487880 TMEM60Q9H2L4 133 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 LMBRD1Q9NUN5 540 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 AURKAIP1Q9NWT8 199 aaPredicted RBP6.84□□□□□ -1.31
USP48-209ENST00000487880 OBP2AQ9NY56 170 aa6.84□□□□□ -1.31
USP48-209ENST00000487880 DRGXA6NNA5 263 aa6.83□□□□□ -1.32
USP48-209ENST00000487880 MTHFD1P11586 935 aaKnown RBP6.83□□□□□ -1.32
USP48-209ENST00000487880 ALAS1P13196 640 aa6.83□□□□□ -1.32
USP48-209ENST00000487880 TYRP14679 529 aa6.83□□□□□ -1.32
USP48-209ENST00000487880 HTR1BP28222 390 aa6.83□□□□□ -1.32
USP48-209ENST00000487880 AGFG1P52594 562 aaKnown RBP6.83□□□□□ -1.32
USP48-209ENST00000487880 UBXN2BQ14CS0 331 aa6.83□□□□□ -1.32
USP48-209ENST00000487880 ARHGAP29Q52LW3 1261 aa6.83□□□□□ -1.32
USP48-209ENST00000487880 CYB5RLQ6IPT4 315 aa6.83□□□□□ -1.32
USP48-209ENST00000487880 FAM90A1Q86YD7 464 aa6.83□□□□□ -1.32
USP48-209ENST00000487880 PLBD2Q8NHP8 589 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms