RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ENTPD7Q9NQZ7 604 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 ADAM28Q9UKQ2 775 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 DERAQ9Y315 318 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 PRRC2BQ5JSZ5 2229 aaKnown RBP17.3■□□□□ 0.36
UPF3A-208ENST00000484246 SF3B1O75533 1304 aaKnown RBP eCLIP17.29■□□□□ 0.36
UPF3A-208ENST00000484246 CASTOR2A6NHX0 329 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 TGFB1I1O43294 461 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 KIF4AO95239 1232 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 LDHAP00338 332 aaKnown RBP17.29■□□□□ 0.36
UPF3A-208ENST00000484246 RPL9P32969 192 aaKnown RBP17.29■□□□□ 0.36
UPF3A-208ENST00000484246 SOX4Q06945 474 aaPredicted RBP17.29■□□□□ 0.36
UPF3A-208ENST00000484246 STK4Q13043 487 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 DUSP6Q16828 381 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 UPP1Q16831 310 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 FUT10Q6P4F1 479 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 BRSK2Q8IWQ3 736 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 SPATA20Q8TB22 786 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 CCDC47Q96A33 483 aaKnown RBP17.29■□□□□ 0.36
UPF3A-208ENST00000484246 PABPC5Q96DU9 382 aaKnown RBP17.29■□□□□ 0.36
UPF3A-208ENST00000484246 FBXL18Q96ME1 805 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 PAAF1Q9BRP4 392 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 CBWD1Q9BRT8 395 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 CHST7Q9NS84 486 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 THEGQ9P2T0 379 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 C2CD2Q9Y426 696 aa17.29■□□□□ 0.36
UPF3A-208ENST00000484246 TCHHQ07283 1943 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.28■□□□□ 0.36
UPF3A-208ENST00000484246 C2orf71A6NGG8 1288 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 F8W810 466 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 XPOTO43592 962 aaKnown RBP17.28■□□□□ 0.36
UPF3A-208ENST00000484246 EXTL3O43909 919 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 LILRB3O75022 631 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 LRPAP1P30533 357 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 UBE2HP62256 183 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 ELAVL2Q12926 359 aaKnown RBP17.28■□□□□ 0.36
UPF3A-208ENST00000484246 PTPN14Q15678 1187 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 KNOP1Q1ED39 458 aaKnown RBP17.28■□□□□ 0.36
UPF3A-208ENST00000484246 PLPP4Q5VZY2 271 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 ARMCX5Q6P1M9 558 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 DCLRE1AQ6PJP8 1040 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 HS2ST1Q7LGA3 356 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 TMC7Q7Z402 723 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 ADGRD2Q7Z7M1 963 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 NT5DC4Q86YG4 428 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 EFHBQ8N7U6 833 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 GOLGA5Q8TBA6 731 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 SLC39A2Q9NP94 309 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 AGPAT3Q9NRZ7 376 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 UBQLN1Q9UMX0 589 aaKnown RBP17.28■□□□□ 0.36
UPF3A-208ENST00000484246 SSX2IPQ9Y2D8 614 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 PCDHGC5Q9Y5F6 944 aa17.28■□□□□ 0.36
UPF3A-208ENST00000484246 PLXNA4Q9HCM2 1894 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.27■□□□□ 0.36
UPF3A-208ENST00000484246 HIDE1A8MVS5 230 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 LACTBL1A8MY62 500 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 GADD45BO75293 160 aaPredicted RBP17.27■□□□□ 0.36
UPF3A-208ENST00000484246 IL18RAPO95256 599 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 ACOT2P49753 483 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 DSG1Q02413 1049 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 KCNC3Q14003 757 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 CD300LGQ6UXG3 332 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 MICAL1Q8TDZ2 1067 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 ATXN2LQ8WWM7 1075 aaKnown RBP17.27■□□□□ 0.36
UPF3A-208ENST00000484246 PPM1EQ8WY54 764 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 HLA-CQ95604 372 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 GPR62Q9BZJ7 368 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 TLE6Q9H808 572 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 UBE2ZQ9H832 354 aaPredicted RBP17.27■□□□□ 0.36
UPF3A-208ENST00000484246 KIAA1586Q9HCI6 787 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 CACNG4Q9UBN1 327 aa17.27■□□□□ 0.36
UPF3A-208ENST00000484246 HOOK1Q9UJC3 728 aaKnown RBP17.27■□□□□ 0.36
UPF3A-208ENST00000484246 KINO60870 393 aaKnown RBP17.26■□□□□ 0.35
UPF3A-208ENST00000484246 TADA2AO75478 443 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 B3GAT3O94766 335 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 KIF20AO95235 890 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 C1RP00736 705 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 URODP06132 367 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 GLUD2P49448 558 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 CLCNKBP51801 687 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 SKIV2LQ15477 1246 aaKnown RBP17.26■□□□□ 0.35
UPF3A-208ENST00000484246 COBLL1Q53SF7 1204 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 KIAA0319Q5VV43 1072 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 SPATA1Q5VX52 437 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 TMEM184AQ6ZMB5 413 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.26■□□□□ 0.35
UPF3A-208ENST00000484246 GPD1LQ8N335 351 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 C18orf25Q96B23 403 aaPredicted RBP17.26■□□□□ 0.35
UPF3A-208ENST00000484246 KIF12Q96FN5 646 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 GSDMAQ96QA5 445 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 FAM213AQ9BRX8 229 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 GTPBP4Q9BZE4 634 aaKnown RBP17.26■□□□□ 0.35
UPF3A-208ENST00000484246 KCTD10Q9H3F6 313 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 GOLGA2P5Q9HBQ8 144 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 RXFP1Q9HBX9 757 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 RMND1Q9NWS8 449 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 HSPBP1Q9NZL4 362 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 TUBGCP4Q9UGJ1 667 aa17.26■□□□□ 0.35
UPF3A-208ENST00000484246 MYO9BQ13459 2157 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.25■□□□□ 0.35
UPF3A-208ENST00000484246 PODXLO00592 558 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms