RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 MUC3AQ02505 3323 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 TTC26A0AVF1 554 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 OGTO15294 1046 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 KINO60870 393 aaKnown RBP13.33□□□□□ -0.28
PTPRF-213ENST00000481019 ADRB2P07550 413 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 CLTAP09496 248 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 CTSAP10619 480 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 SCP2P22307 547 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 KCNA5P22460 613 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 CLCNKBP51801 687 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 YARSP54577 528 aaKnown RBP13.33□□□□□ -0.28
PTPRF-213ENST00000481019 AMPD3Q01432 767 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 FAM160A1Q05DH4 1040 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 SNW1Q13573 536 aaKnown RBP13.33□□□□□ -0.28
PTPRF-213ENST00000481019 KCNC3Q14003 757 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 HSP90AA2PQ14568 343 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-213ENST00000481019 PTPN14Q15678 1187 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 CLUL1Q15846 466 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 DUSP6Q16828 381 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 FAM26FQ5R3K3 315 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 SCARA3Q6AZY7 606 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 KANK3Q6NY19 840 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 KRBA2Q6ZNG9 492 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 APBB1IPQ7Z5R6 666 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-213ENST00000481019 FMR1NBQ8N0W7 255 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-213ENST00000481019 EFHBQ8N7U6 833 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 ENGASEQ8NFI3 743 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 SCFD1Q8WVM8 642 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 PABPC5Q96DU9 382 aaKnown RBP13.33□□□□□ -0.28
PTPRF-213ENST00000481019 CBWD1Q9BRT8 395 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 HERC2P3Q9BVR0 1158 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 LRRC27Q9C0I9 530 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 TLE6Q9H808 572 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 SLC39A2Q9NP94 309 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 CLDND1Q9NY35 253 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 CLEC1BQ9P126 229 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 CPSF3Q9UKF6 684 aaKnown RBP13.33□□□□□ -0.28
PTPRF-213ENST00000481019 PCDHB13Q9Y5F0 798 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 VWA8A3KMH1 1905 aa13.33□□□□□ -0.28
PTPRF-213ENST00000481019 BDP1A6H8Y1 2624 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-213ENST00000481019 GOLGA8IPA6NC78 632 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 GOLGA8JA6NMD2 632 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 I3L4J1 428 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 C2CD2LO14523 706 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 TGFB1I1O43294 461 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 CLASP2O75122 1294 aaKnown RBP13.32□□□□□ -0.28
PTPRF-213ENST00000481019 ZNF202O95125 648 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 SOD2P04179 222 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 DPYDQ12882 1025 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 STK4Q13043 487 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 SMC1AQ14683 1233 aaKnown RBP13.32□□□□□ -0.28
PTPRF-213ENST00000481019 ZBTB6Q15916 424 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 UPP1Q16831 310 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 KMT5BQ4FZB7 885 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 CCDC183Q5T5S1 534 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 KIAA0319Q5VV43 1072 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 LLGL2Q6P1M3 1020 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 FUT10Q6P4F1 479 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 EP400NLQ6ZTU2 488 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 NELFCDQ8IXH7 590 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 KIAA0895Q8NCT3 520 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-213ENST00000481019 ZNF507Q8TCN5 953 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 SAAL1Q96ER3 474 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 ASB2Q96Q27 587 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 COLEC11Q9BWP8 271 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 PCIF1Q9H4Z3 704 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 NGRNQ9NPE2 291 aaKnown RBP13.32□□□□□ -0.28
PTPRF-213ENST00000481019 TOPORSQ9NS56 1045 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-213ENST00000481019 USP25Q9UHP3 1055 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 ADAM28Q9UKQ2 775 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 AGO2Q9UKV8 859 aaKnown RBP13.32□□□□□ -0.28
PTPRF-213ENST00000481019 BARX2Q9UMQ3 279 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-213ENST00000481019 COG5Q9UP83 839 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 TCF20Q9UGU0 1960 aaKnown RBP13.32□□□□□ -0.28
PTPRF-213ENST00000481019 TTC28Q96AY4 2481 aa13.32□□□□□ -0.28
PTPRF-213ENST00000481019 PVALEFA0A1B0GWK0 134 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 PPEF2O14830 753 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 NFICP08651 508 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 BMP1P13497 986 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 CA8P35219 290 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 BRCC3P46736 316 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 RTP2Q5QGT7 225 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 JADE1Q6IE81 842 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 PDE12Q6L8Q7 609 aaKnown RBP13.31□□□□□ -0.28
PTPRF-213ENST00000481019 CAVIN1Q6NZI2 390 aaKnown RBP13.31□□□□□ -0.28
PTPRF-213ENST00000481019 ELOA2Q8IYF1 753 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-213ENST00000481019 GPT2Q8TD30 523 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 ATXN2LQ8WWM7 1075 aaKnown RBP13.31□□□□□ -0.28
PTPRF-213ENST00000481019 POMGNT1Q8WZA1 660 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 FAM212AQ96EL1 285 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 MSLNLQ96KJ4 702 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 TIGD1Q96MW7 591 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 CHST7Q9NS84 486 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 CDH22Q9UJ99 828 aa13.31□□□□□ -0.28
PTPRF-213ENST00000481019 PLXNA3P51805 1871 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 CUL9Q8IWT3 2517 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 GRXCR2A6NFK2 248 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 PODXLO00592 558 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms