RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 ZRSR2Q15696 482 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 SEPT7Q16181 437 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 DAB2IPQ5VWQ8 1189 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 ZNF804AQ7Z570 1209 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 PLVAPQ9BX97 442 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 PCDHA1Q9Y5I3 950 aa19.97■□□□□ 0.79
CCDC88B-207ENST00000479965 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 GCLMP48507 274 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 STAT4Q14765 748 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 SLC1A5Q15758 541 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 IZUMO3Q5VZ72 239 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 OTOAQ7RTW8 1153 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 APLFQ8IW19 511 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 TPH2Q8IWU9 490 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 CD101Q93033 1021 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 RBM15Q96T37 977 aaKnown RBP eCLIP19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 SAYSD1Q9NPB0 183 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 PIAS1O75925 651 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 GSTT1P30711 240 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 KCNQ4P56696 695 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 SNAP25P60880 206 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 FYB2Q5VWT5 728 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 CLNKQ7Z7G1 428 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 VPS37BQ9H9H4 285 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 LGALS13Q9UHV8 139 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 R3HDM2Q9Y2K5 976 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 LOC102724428A0A0B4J2F2 783 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 ZBTB5O15062 677 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 CYP26A1O43174 497 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 TJP3O95049 919 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 IVDP26440 423 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 SIK1P57059 783 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 ZNF543Q08ER8 600 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 ELMO3Q96BJ8 720 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 RBM41Q96IZ5 413 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 UBE2OQ9C0C9 1292 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 NUMBLQ9Y6R0 609 aa19.96■□□□□ 0.79
CCDC88B-207ENST00000479965 COL22A1Q8NFW1 1626 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 EMSYQ7Z589 1322 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 MAP3K7O43318 606 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 TRABD2AQ86V40 505 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 PPM1KQ8N3J5 372 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 PDCD7Q8N8D1 485 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 ITFG2Q969R8 447 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 HERPUD2Q9BSE4 406 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 SLAIN2Q9P270 581 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 MAGEA4P43358 317 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 HADHBP55084 474 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 ARHGAP4P98171 946 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 BMT2Q1RMZ1 405 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 LVRNQ6Q4G3 990 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 BRINP3Q76B58 766 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 FAM178BQ8IXR5 827 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 RTFDC1Q9BY42 306 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 C12orf65Q9H3J6 166 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 KIAA1586Q9HCI6 787 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 LRRC4BQ9NT99 713 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 ZMYM2Q9UBW7 1377 aa19.95■□□□□ 0.78
CCDC88B-207ENST00000479965 CETN2P41208 172 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 SLC34A1Q06495 639 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 PDK4Q16654 411 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 CMPK2Q5EBM0 449 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 RINT1Q6NUQ1 792 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 NOP9Q86U38 636 aaKnown RBP19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 SLC47A2Q86VL8 602 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 WDR60Q8WVS4 1066 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 MAML1Q92585 1016 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 RPGRQ92834 1020 aaKnown RBP19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 AGPAT3Q9NRZ7 376 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 ARL8BQ9NVJ2 186 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 MAGEA13PA6NCF6 341 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 CCDC22O60826 627 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 GSTA2P09210 222 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 ETS2P15036 469 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 PIK3CAP42336 1068 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 SPIRE1Q08AE8 756 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 BFSP1Q12934 665 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 PLEKHG4Q58EX7 1191 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 CYP2W1Q8TAV3 490 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 ANAPC7Q9UJX3 599 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 WASF2Q9Y6W5 498 aa19.94■□□□□ 0.78
CCDC88B-207ENST00000479965 A0A1W2PPM1 405 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 SIGLEC16A6NMB1 481 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 FGFR1P11362 822 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 PLS3P13797 630 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 CPA2P48052 419 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 PPP4CP60510 307 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 THOC5Q13769 683 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 TBC1D9BQ66K14 1250 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 C12orf50Q8NA57 414 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 RFWD2Q8NHY2 731 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 DYDC2Q96IM9 177 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 TRAPPC9Q96Q05 1148 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 TMX4Q9H1E5 349 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 HAUS5O94927 633 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 PSMG1O95456 288 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 ZNF76P36508 570 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 PTK6Q13882 451 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 C2CD6Q53TS8 623 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms