RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 PEX3P56589 373 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ATP2C1P98194 919 aaPredicted RBP13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SOX4Q06945 474 aaPredicted RBP13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CEP57Q86XR8 500 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 CCDC105Q8IYK2 499 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SIX5Q8N196 739 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 KCTD17Q8N5Z5 321 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 UROC1Q96N76 676 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 ZMAT2Q96NC0 199 aaKnown RBP13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 RTP3Q9BQQ7 232 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 RAB34Q9BZG1 259 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 MFSD1Q9H3U5 465 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 SLC2A4RGQ9NR83 387 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 BACE2Q9Y5Z0 518 aa13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 EP300Q09472 2414 aaPredicted RBP13.46□□□□□ -0.25
MSH5-SAPCD1-205ENST00000476085 DCHS1Q96JQ0 3298 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 PHLPP2Q6ZVD8 1323 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 GFRA3O60609 400 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 B3GAT3O94766 335 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 C8AP07357 584 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 KCNE1P15382 129 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 LIG1P18858 919 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 GUCY2CP25092 1073 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 OR1D2P34982 312 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 GNL2Q13823 731 aaKnown RBP13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 MRPL58Q14197 206 aaKnown RBP13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 GLRA4Q5JXX5 417 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 KRT79Q5XKE5 535 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 PHLDB3Q6NSJ2 640 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 POTEHQ6S545 545 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 DTHD1Q6ZMT9 781 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 GRASPQ7Z6J2 395 aaPredicted RBP13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 FLCNQ8NFG4 579 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SPIRE2Q8WWL2 714 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 DDX27Q96GQ7 796 aaKnown RBP13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 PNMA5Q96PV4 448 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 RPP25Q9BUL9 199 aaKnown RBP13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TIPINQ9BVW5 301 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TARS2Q9BW92 718 aaKnown RBP13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 PIDD1Q9HB75 910 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 GOLGA2P5Q9HBQ8 144 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 DLGAP2Q9P1A6 1054 aa13.45□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ABLIM3O94929 683 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 MCF2P10911 925 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 FSHRP23945 695 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TKTP29401 623 aaKnown RBP13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SLC12A3P55017 1021 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 NTHL1P78549 312 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 DMP1Q13316 513 aaPredicted RBP13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TMEM132AQ24JP5 1023 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 RILPL1Q5EBL4 403 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 AXDND1Q5T1B0 1012 aaPredicted RBP13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SLC8B1Q6J4K2 584 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ASCL5Q7RTU5 278 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 APBB1IPQ7Z5R6 666 aaPredicted RBP13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SYT2Q8N9I0 419 aaPredicted RBP13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 DTWD2Q8NBA8 298 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TMEM161BQ8NDZ6 487 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 GPR152Q8TDT2 470 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 FGF14Q92915 247 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ZBTB45Q96K62 511 aaPredicted RBP13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SNX27Q96L92 541 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 DRC1Q96MC2 740 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 MRPL4Q9BYD3 311 aaKnown RBP13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 KMT5AQ9NQR1 393 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 AVENQ9NQS1 362 aaPredicted RBP13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 CNTN3Q9P232 1028 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 DNMT3BQ9UBC3 853 aaKnown RBP13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 FBXL21Q9UKT6 434 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 CDH7Q9ULB5 785 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 NUMBLQ9Y6R0 609 aa13.44□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 F5P12259 2224 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ARHGEF37A1IGU5 675 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 PRR23AA6NEV1 266 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 CCDC169A6NNP5 214 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SFI1A8K8P3 1242 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TRAPPC3O43617 180 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 CD2BP2O95400 341 aaKnown RBP13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 CFHP08603 1231 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 BRCC3P46736 316 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 RABEP1Q15276 862 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SLC10A6Q3KNW5 377 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ZNF568Q3ZCX4 644 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ARSHQ5FYA8 562 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 PPM1LQ5SGD2 360 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ARL6IP4Q66PJ3 421 aaKnown RBP13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 PARM1Q6UWI2 310 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 MPZL3Q6UWV2 235 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ANKS3Q6ZW76 656 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 GET4Q7L5D6 327 aaPredicted RBP13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ZNF461Q8TAF7 563 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ITFG1Q8TB96 612 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SLC7A14Q8TBB6 771 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 FGF13Q92913 245 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TMX3Q96JJ7 454 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ACAP3Q96P50 834 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 CCDC94Q9BW85 323 aaPredicted RBP13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TOPORSQ9NS56 1045 aaPredicted RBP13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 CDY1Q9Y6F8 540 aa13.43□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 FRYLO94915 3013 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms