RNA–Protein interactions for RNA: ENST00000474564.1

COL12A1-206, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 3

Gene COL12A1, Length 499 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-206ENST00000474564 UBXN11Q5T124 520 aa11.18□□□□□ -0.62
COL12A1-206ENST00000474564 TRAF7Q6Q0C0 670 aa11.18□□□□□ -0.62
COL12A1-206ENST00000474564 UBE2Q1Q7Z7E8 422 aa11.18□□□□□ -0.62
COL12A1-206ENST00000474564 ECHDC2Q86YB7 292 aa11.18□□□□□ -0.62
COL12A1-206ENST00000474564 PDLIM2Q96JY6 352 aa11.18□□□□□ -0.62
COL12A1-206ENST00000474564 NAP1L5Q96NT1 182 aaPredicted RBP11.18□□□□□ -0.62
COL12A1-206ENST00000474564 ERGIC2Q96RQ1 377 aa11.18□□□□□ -0.62
COL12A1-206ENST00000474564 HAPLN2Q9GZV7 340 aa11.18□□□□□ -0.62
COL12A1-206ENST00000474564 NUCKS1Q9H1E3 243 aaKnown RBP11.18□□□□□ -0.62
COL12A1-206ENST00000474564 NXF3Q9H4D5 531 aaKnown RBP11.18□□□□□ -0.62
COL12A1-206ENST00000474564 INTS13Q9NVM9 706 aa11.18□□□□□ -0.62
COL12A1-206ENST00000474564 ZNHIT6Q9NWK9 470 aaKnown RBP11.18□□□□□ -0.62
COL12A1-206ENST00000474564 TMEM161AQ9NX61 479 aa11.18□□□□□ -0.62
COL12A1-206ENST00000474564 ITGA11Q9UKX5 1188 aa11.18□□□□□ -0.62
COL12A1-206ENST00000474564 TRIP12Q14669 1992 aaPredicted RBP11.17□□□□□ -0.62
COL12A1-206ENST00000474564 CARNS1A5YM72 827 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 LRRIQ3A6PVS8 624 aaPredicted RBP11.17□□□□□ -0.62
COL12A1-206ENST00000474564 FGBP02675 491 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 RFX1P22670 979 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 PAX3P23760 479 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 ATICP31939 592 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 GSDMDP57764 484 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 YWHAEP62258 255 aaKnown RBP11.17□□□□□ -0.62
COL12A1-206ENST00000474564 CLDN10P78369 228 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 FAM189BP81408 668 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 RNASELQ05823 741 aaKnown RBP11.17□□□□□ -0.62
COL12A1-206ENST00000474564 SYCP1Q15431 976 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 MIIPQ5JXC2 388 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 JADE1Q6IE81 842 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 PSRC1Q6PGN9 363 aaPredicted RBP11.17□□□□□ -0.62
COL12A1-206ENST00000474564 SV2AQ7L0J3 742 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 ENOSF1Q7L5Y1 443 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 CEP120Q8N960 986 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 SMG8Q8ND04 991 aaKnown RBP11.17□□□□□ -0.62
COL12A1-206ENST00000474564 EHBP1Q8NDI1 1231 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 TAF4BQ92750 862 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 DDX27Q96GQ7 796 aaKnown RBP11.17□□□□□ -0.62
COL12A1-206ENST00000474564 SNX27Q96L92 541 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 POP1Q99575 1024 aaKnown RBP11.17□□□□□ -0.62
COL12A1-206ENST00000474564 MRPL9Q9BYD2 267 aaKnown RBP11.17□□□□□ -0.62
COL12A1-206ENST00000474564 EDEM3Q9BZQ6 932 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 WNT8AQ9H1J5 351 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 TMX1Q9H3N1 280 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 IL23AQ9NPF7 189 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 RAB20Q9NX57 234 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 DPP3Q9NY33 737 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 GCNT4Q9P109 453 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 CNTN3Q9P232 1028 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 LUC7L2Q9Y383 392 aaKnown RBP11.17□□□□□ -0.62
COL12A1-206ENST00000474564 HES2Q9Y543 173 aa11.17□□□□□ -0.62
COL12A1-206ENST00000474564 UMODL1Q5DID0 1318 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 ITIH6Q6UXX5 1313 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 ARHGEF37A1IGU5 675 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 TRIM43BA6NCK2 446 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 C9IYK1 514 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 AP5Z1O43299 807 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 FAM189A1O60320 539 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 KCNE1P15382 129 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 CSF2RAP15509 400 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 CYP3A5P20815 502 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 RPL9P32969 192 aaKnown RBP11.16□□□□□ -0.62
COL12A1-206ENST00000474564 PNPLA4P41247 253 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 MFAP3P55082 362 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 MCCD1P59942 119 aaPredicted RBP11.16□□□□□ -0.62
COL12A1-206ENST00000474564 DLG4P78352 724 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 NCOA4Q13772 614 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 MBTPS1Q14703 1052 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 ZACNQ401N2 412 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 ZBTB41Q5SVQ8 909 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 TRAPPC11Q7Z392 1133 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 NPAS4Q8IUM7 802 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 CNGA4Q8IV77 575 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 VSTM4Q8IW00 320 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 ZSWIM2Q8NEG5 633 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 TRIM43Q96BQ3 446 aaPredicted RBP11.16□□□□□ -0.62
COL12A1-206ENST00000474564 ZNF560Q96MR9 790 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 UROC1Q96N76 676 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 NT5C1BQ96P26 610 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 LSM14BQ9BX40 385 aaKnown RBP11.16□□□□□ -0.62
COL12A1-206ENST00000474564 TMEM117Q9H0C3 514 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 KLK14Q9P0G3 267 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 SIP14410 1827 aa11.16□□□□□ -0.62
COL12A1-206ENST00000474564 SMIM28A0A1B0GU29 152 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 ARL5CA6NH57 179 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 ZBBXA8MT70 800 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 TEX33O43247 280 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 MGEA5O60502 916 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 C4BPAP04003 597 aaKnown RBP11.15□□□□□ -0.62
COL12A1-206ENST00000474564 TBXAS1P24557 533 aaPredicted RBP11.15□□□□□ -0.62
COL12A1-206ENST00000474564 PPP3CAQ08209 521 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 GRIK3Q13003 919 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 HS1BP3Q53T59 392 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 NOMO2Q5JPE7 1267 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 SMYD5Q6GMV2 418 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 APTXQ7Z2E3 356 aaKnown RBP11.15□□□□□ -0.62
COL12A1-206ENST00000474564 TTC39CQ8N584 583 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 BADQ92934 168 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 FAXDC2Q96IV6 333 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 SPAG5Q96R06 1193 aa11.15□□□□□ -0.62
COL12A1-206ENST00000474564 GAD1Q99259 594 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms