RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	GPR42	O15529	346 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	FRS3	O43559	492 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	PRICKLE3	O43900	615 aa	Predicted RBP	4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	PLIN1	O60240	522 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	MAP4K4	O95819	1239 aa	Predicted RBP	4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	RAP2A	P10114	183 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	ATP5J	P18859	108 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	PRDX5	P30044	214 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	JAG1	P78504	1218 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	SEMA5A	Q13591	1074 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	FGL2	Q14314	439 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	PLS1	Q14651	629 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	LLGL1	Q15334	1064 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	FLYWCH1	Q4VC44	716 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	CCDC157	Q569K6	752 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	DRICH1	Q6PGQ1	229 aa	Predicted RBP	4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	DARS2	Q6PI48	645 aa	Known RBP	4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	KSR2	Q6VAB6	950 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	POLN	Q7Z5Q5	900 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	C11orf96	Q7Z7L8	435 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	CIR1	Q86X95	450 aa	Predicted RBP	4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	FAM90A1	Q86YD7	464 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	FUK	Q8N0W3	1084 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	MDGA1	Q8NFP4	955 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	DNER	Q8NFT8	737 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	FBXO18	Q8NFZ0	1043 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	SLC35B2	Q8TB61	432 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	MTFMT	Q96DP5	389 aa	Known RBP	4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	SLC35A4	Q96G79	324 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	OR14A2	Q96R54	314 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	NDC1	Q9BTX1	674 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	ABCF2	Q9UG63	623 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	FEZ2	Q9UHY8	353 aa	Predicted RBP	4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	ZFR2	Q9UPR6	939 aa	Known RBP	4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	SH3BP1	Q9Y3L3	701 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	PNPLA7	Q6ZV29	1317 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	PATE3	B3GLJ2	98 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044		H3BUI4	141 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	GOLIM4	O00461	696 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	FOXS1	O43638	330 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	MFAP3L	O75121	409 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	IPO13	O94829	963 aa	Known RBP	4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	AMH	P03971	560 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	MTHFD1	P11586	935 aa	Known RBP	4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	GNAT2	P19087	354 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	SMARCA1	P28370	1054 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	CREM	Q03060	361 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	UBE4A	Q14139	1066 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	CNN3	Q15417	329 aa	Known RBP	4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	KIAA0753	Q2KHM9	967 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	FAM214A	Q32MH5	1076 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	COBLL1	Q53SF7	1204 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	EMC10	Q5UCC4	262 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	RNF220	Q5VTB9	566 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	ANKS6	Q68DC2	871 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	SWSAP1	Q6NVH7	229 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	GLB1L	Q6UWU2	654 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	CCDC149	Q6ZUS6	474 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	ST8SIA2	Q92186	375 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	MYOC	Q99972	504 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	EPC1	Q9H2F5	836 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	BHMT2	Q9H2M3	363 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	MRPL46	Q9H2W6	279 aa	Known RBP	4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	ATP6V0A4	Q9HBG4	840 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	GNL3L	Q9NVN8	582 aa	Known RBP	4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	RTEL1	Q9NZ71	1219 aa		4.84	□□□□□ -1.63
PTCD3-209	ENST00000472044	GRM6	O15303	877 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	PHGDH	O43175	533 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	SLC43A1	O75387	559 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	ITGB3	P05106	788 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	CD1A	P06126	327 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	MSX2	P35548	267 aa	Predicted RBP	4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	UBXN2B	Q14CS0	331 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	ELAVL1	Q15717	326 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	CSRP2	Q16527	193 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	DCAF17	Q5H9S7	520 aa	Predicted RBP	4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	HTR3D	Q70Z44	454 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	XYLT1	Q86Y38	959 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	ANKRD35	Q8N283	1001 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	OR52N2	Q8NGI0	321 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	SVIP	Q8NHG7	77 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	ZFP28	Q8NHY6	868 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	BRIX1	Q8TDN6	353 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	ANKS1A	Q92625	1134 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	MIEF2	Q96C03	454 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	SLC39A13	Q96H72	371 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	TMEM176A	Q96HP8	235 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	CPPED1	Q9BRF8	314 aa	Predicted RBP	4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	C22orf23	Q9BZE7	217 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	ADAM7	Q9H2U9	754 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	RLIM	Q9NVW2	624 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	RAPGEFL1	Q9UHV5	662 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	ZDHHC8	Q9ULC8	765 aa		4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	RUVBL1	Q9Y265	456 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-209	ENST00000472044	PRR5-ARHGAP8	B1AHC4	643 aa		4.82	□□□□□ -1.64
PTCD3-209	ENST00000472044	APAF1	O14727	1248 aa		4.82	□□□□□ -1.64
PTCD3-209	ENST00000472044	POMC	P01189	267 aa		4.82	□□□□□ -1.64
PTCD3-209	ENST00000472044	SBK3	P0C264	359 aa		4.82	□□□□□ -1.64
PTCD3-209	ENST00000472044	ALAS1	P13196	640 aa		4.82	□□□□□ -1.64

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