RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 TUBGCP4Q9UGJ1 667 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 DACH1Q9UI36 760 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 PCDHA11Q9Y5I1 949 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 CHD7Q9P2D1 2997 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 CETN3O15182 167 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 IGFBP6P24592 240 aaPredicted RBP16.05■□□□□ 0.16
COL9A3-209ENST00000469852 RPL13P26373 211 aaKnown RBP16.05■□□□□ 0.16
COL9A3-209ENST00000469852 DLG4P78352 724 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 GRIK3Q13003 919 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 ZBTB6Q15916 424 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 C1orf220Q5T0J3 134 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 IRF2BP1Q8IU81 584 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 FAM186BQ8IYM0 893 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 LRRC43Q8N309 656 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 CSGALNACT2Q8N6G5 542 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 URGCPQ8TCY9 931 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 RABGGTAQ92696 567 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 CCDC127Q96BQ5 260 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 KIF12Q96FN5 646 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 BORCS6Q96GS4 357 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 PAAF1Q9BRP4 392 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 SRRTQ9BXP5 876 aaKnown RBP16.05■□□□□ 0.16
COL9A3-209ENST00000469852 NRDE2Q9H7Z3 1164 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 PLEKHA5Q9HAU0 1116 aa16.05■□□□□ 0.16
COL9A3-209ENST00000469852 LRRIQ3A6PVS8 624 aaPredicted RBP16.04■□□□□ 0.16
COL9A3-209ENST00000469852 F8W810 466 aa16.04■□□□□ 0.16
COL9A3-209ENST00000469852 IL18RAPO95256 599 aa16.04■□□□□ 0.16
COL9A3-209ENST00000469852 THP07101 528 aa16.04■□□□□ 0.16
COL9A3-209ENST00000469852 PSMC2P35998 433 aaKnown RBP16.04■□□□□ 0.16
COL9A3-209ENST00000469852 POU5F1Q01860 360 aaKnown RBP16.04■□□□□ 0.16
COL9A3-209ENST00000469852 DSC1Q08554 894 aa16.04■□□□□ 0.16
COL9A3-209ENST00000469852 PSMD6Q15008 389 aa16.04■□□□□ 0.16
COL9A3-209ENST00000469852 HSP90AA4PQ58FG1 418 aa16.04■□□□□ 0.16
COL9A3-209ENST00000469852 FIBCD1Q8N539 461 aa16.04■□□□□ 0.16
COL9A3-209ENST00000469852 OR5B17Q8NGF7 314 aa16.04■□□□□ 0.16
COL9A3-209ENST00000469852 PARD3BQ8TEW8 1205 aa16.04■□□□□ 0.16
COL9A3-209ENST00000469852 CEP63Q96MT8 703 aa16.04■□□□□ 0.16
COL9A3-209ENST00000469852 MRPL9Q9BYD2 267 aaKnown RBP16.04■□□□□ 0.16
COL9A3-209ENST00000469852 ASB7Q9H672 318 aa16.04■□□□□ 0.16
COL9A3-209ENST00000469852 FRMD4BQ9Y2L6 1034 aa16.04■□□□□ 0.16
COL9A3-209ENST00000469852 CASTOR2A6NHX0 329 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 SLC16A3O15427 465 aaKnown RBP16.03■□□□□ 0.16
COL9A3-209ENST00000469852 ZC3H11AO75152 810 aaKnown RBP eCLIP16.03■□□□□ 0.16
COL9A3-209ENST00000469852 TRIM49P0CI25 452 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 TRIM49CP0CI26 452 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 DLATP10515 647 aaKnown RBP16.03■□□□□ 0.16
COL9A3-209ENST00000469852 DNAJB2P25686 324 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 SLC11A1P49279 550 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 SMAD3P84022 425 aaKnown RBP16.03■□□□□ 0.16
COL9A3-209ENST00000469852 TAP1Q03518 808 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 RNASELQ05823 741 aaKnown RBP16.03■□□□□ 0.16
COL9A3-209ENST00000469852 NCAPHQ15003 741 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 CT47A1Q5JQC4 288 aaPredicted RBP16.03■□□□□ 0.16
COL9A3-209ENST00000469852 FILIP1Q7Z7B0 1213 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 CD302Q8IX05 232 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 COLGALT2Q8IYK4 626 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 AOPEPQ8N6M6 819 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 ENOX1Q8TC92 643 aaKnown RBP16.03■□□□□ 0.16
COL9A3-209ENST00000469852 BCL7CQ8WUZ0 217 aaPredicted RBP16.03■□□□□ 0.16
COL9A3-209ENST00000469852 ZNF516Q92618 1163 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 GUCD1Q96NT3 240 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 C17orf80Q9BSJ5 609 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 MKNK1Q9BUB5 465 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 SAMSN1Q9NSI8 373 aaKnown RBP16.03■□□□□ 0.16
COL9A3-209ENST00000469852 KANSL3Q9P2N6 904 aa16.03■□□□□ 0.16
COL9A3-209ENST00000469852 CDH23Q9H251 3354 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 NT5C1B-RDH14C9J2C7 533 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 PPEF2O14830 753 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 MAPK13O15264 365 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 EPB41P11171 864 aaKnown RBP16.02■□□□□ 0.16
COL9A3-209ENST00000469852 BFSP1Q12934 665 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 TUSC3Q13454 348 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 TMEM132DQ14C87 1099 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 RAB30Q15771 203 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 SPATA1Q5VX52 437 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 LRSAM1Q6UWE0 723 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 TMEM173Q86WV6 379 aaPredicted RBP16.02■□□□□ 0.16
COL9A3-209ENST00000469852 DHX40Q8IX18 779 aaKnown RBP16.02■□□□□ 0.16
COL9A3-209ENST00000469852 COLGALT1Q8NBJ5 622 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 CLP1Q92989 425 aaKnown RBP16.02■□□□□ 0.16
COL9A3-209ENST00000469852 CGRRF1Q99675 332 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 MTMR12Q9C0I1 747 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 HSD3B7Q9H2F3 369 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 MSRAQ9UJ68 235 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 C2CD2Q9Y426 696 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 NFE2L3Q9Y4A8 694 aa16.02■□□□□ 0.16
COL9A3-209ENST00000469852 PLXNA4Q9HCM2 1894 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 GALTP07902 379 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 ZNF165P49910 485 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 CLCNKBP51801 687 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 VAMP7P51809 220 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 BCAR1P56945 870 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 MCCD1P59942 119 aaPredicted RBP16.01■□□□□ 0.15
COL9A3-209ENST00000469852 TFAMQ00059 246 aaKnown RBP16.01■□□□□ 0.15
COL9A3-209ENST00000469852 PPP3CAQ08209 521 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 IQCB1Q15051 598 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 SPOUT1Q5T280 376 aaKnown RBP16.01■□□□□ 0.15
COL9A3-209ENST00000469852 INTS8Q75QN2 995 aaKnown RBP16.01■□□□□ 0.15
COL9A3-209ENST00000469852 C3orf58Q8NDZ4 430 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 CXorf38Q8TB03 319 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms