RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 KRT17Q04695 432 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 UBE3AQ05086 875 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 SPAG1Q07617 926 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 ADGRE1Q14246 886 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 MYBPC2Q14324 1141 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 HSP90AA2PQ14568 343 aaPredicted RBP12.98□□□□□ -0.33
VPS13D-204ENST00000469054 ZBTB6Q15916 424 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 NFIL3Q16649 462 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 CBWD2Q8IUF1 395 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 SLC9A9Q8IVB4 645 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 BRSK2Q8IWQ3 736 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 ADSSL1Q8N142 457 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 PIP4P2Q8N4L2 257 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 RDH13Q8NBN7 331 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 MYLIPQ8WY64 445 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 KIF12Q96FN5 646 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 COLEC11Q9BWP8 271 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 LMAN2LQ9H0V9 348 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 RBAKQ9NYW8 714 aaPredicted RBP12.98□□□□□ -0.33
VPS13D-204ENST00000469054 PUF60Q9UHX1 559 aaKnown RBP12.98□□□□□ -0.33
VPS13D-204ENST00000469054 UBQLN1Q9UMX0 589 aaKnown RBP12.98□□□□□ -0.33
VPS13D-204ENST00000469054 LZTS1Q9Y250 596 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.98□□□□□ -0.33
VPS13D-204ENST00000469054 LAMA2P24043 3122 aaKnown RBP12.98□□□□□ -0.33
VPS13D-204ENST00000469054 FNDC1Q4ZHG4 1894 aaPredicted RBP12.97□□□□□ -0.33
VPS13D-204ENST00000469054 XPOTO43592 962 aaKnown RBP12.97□□□□□ -0.33
VPS13D-204ENST00000469054 NR3C1P04150 777 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 CD44P16070 742 aaKnown RBP12.97□□□□□ -0.33
VPS13D-204ENST00000469054 POU3F3P20264 500 aaPredicted RBP12.97□□□□□ -0.33
VPS13D-204ENST00000469054 IGFBP4P22692 258 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 SOX4Q06945 474 aaPredicted RBP12.97□□□□□ -0.33
VPS13D-204ENST00000469054 STIM1Q13586 685 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 SNRNP35Q16560 246 aaKnown RBP12.97□□□□□ -0.33
VPS13D-204ENST00000469054 PTPROQ16827 1216 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 ZCWPW2Q504Y3 356 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 JADE1Q6IE81 842 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 CENPPQ6IPU0 288 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 NT5DC4Q86YG4 428 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 BCL7CQ8WUZ0 217 aaPredicted RBP12.97□□□□□ -0.33
VPS13D-204ENST00000469054 POF1BQ8WVV4 589 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 C18orf25Q96B23 403 aaPredicted RBP12.97□□□□□ -0.33
VPS13D-204ENST00000469054 DDX27Q96GQ7 796 aaKnown RBP12.97□□□□□ -0.33
VPS13D-204ENST00000469054 DHTKD1Q96HY7 919 aaPredicted RBP12.97□□□□□ -0.33
VPS13D-204ENST00000469054 UROC1Q96N76 676 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 PAAF1Q9BRP4 392 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 GOLGA2P5Q9HBQ8 144 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 MARCH5Q9NX47 278 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 LMCD1Q9NZU5 365 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 CACNG4Q9UBN1 327 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 DERAQ9Y315 318 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 C2CD2Q9Y426 696 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 GBF1Q92538 1859 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 SZT2Q5T011 3432 aa12.97□□□□□ -0.33
VPS13D-204ENST00000469054 PPP1R3GB7ZBB8 358 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 F8W810 466 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 TULP1O00294 542 aaPredicted RBP12.96□□□□□ -0.33
VPS13D-204ENST00000469054 PSMA7O14818 248 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 TADA2AO75478 443 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 NFICP08651 508 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 FOSL2P15408 326 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 DNAJB1P25685 340 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 RPL13P26373 211 aaKnown RBP12.96□□□□□ -0.33
VPS13D-204ENST00000469054 RPL9P32969 192 aaKnown RBP12.96□□□□□ -0.33
VPS13D-204ENST00000469054 CLCNKBP51801 687 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 WNT7BP56706 349 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 ADAM9Q13443 819 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 CAMK1Q14012 370 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 TMEM132DQ14C87 1099 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 SURF1Q15526 300 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 UPP1Q16831 310 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 EDRF1Q3B7T1 1238 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 SPATA1Q5VX52 437 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 DCLRE1AQ6PJP8 1040 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 DDX53Q86TM3 631 aaKnown RBP12.96□□□□□ -0.33
VPS13D-204ENST00000469054 RABGGTAQ92696 567 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 MRPL38Q96DV4 380 aaKnown RBP12.96□□□□□ -0.33
VPS13D-204ENST00000469054 TSG101Q99816 390 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 PDE11AQ9HCR9 933 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 STK39Q9UEW8 545 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 TUBGCP4Q9UGJ1 667 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 ADAM28Q9UKQ2 775 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 MTCH2Q9Y6C9 303 aa12.96□□□□□ -0.33
VPS13D-204ENST00000469054 TMEM189-UBE2V1I3L0A0 370 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 PODXLO00592 558 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 B3GAT3O94766 335 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 PTMSP20962 102 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 NR2F2P24468 414 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 CCNE1P24864 410 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 LRPAP1P30533 357 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 GUCY2FP51841 1108 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 PMS1P54277 932 aaKnown RBP12.95□□□□□ -0.34
VPS13D-204ENST00000469054 ERVFC1P60507 584 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 CYP24A1Q07973 514 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 CEP135Q66GS9 1140 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 ANKRD40Q6AI12 368 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 KLHL10Q6JEL2 608 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 RBM43Q6ZSC3 357 aaKnown RBP12.95□□□□□ -0.34
VPS13D-204ENST00000469054 EFCAB13Q8IY85 973 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 VPS52Q8N1B4 723 aa12.95□□□□□ -0.34
VPS13D-204ENST00000469054 BEST2Q8NFU1 509 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms