RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 POLIQ9UNA4 740 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 CDY1Q9Y6F8 540 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 PHLPP2Q6ZVD8 1323 aa22.65■■□□□ 1.22
COL6A1-203ENST00000466285 ZNF292O60281 2723 aa22.65■■□□□ 1.22
COL6A1-203ENST00000466285 TMEM189-UBE2V1I3L0A0 370 aa22.65■■□□□ 1.22
COL6A1-203ENST00000466285 C1RP00736 705 aa22.65■■□□□ 1.22
COL6A1-203ENST00000466285 RBM25P49756 843 aaKnown RBP22.65■■□□□ 1.22
COL6A1-203ENST00000466285 PPP2R5AQ15172 486 aa22.65■■□□□ 1.22
COL6A1-203ENST00000466285 UPP1Q16831 310 aa22.65■■□□□ 1.22
COL6A1-203ENST00000466285 LIN9Q5TKA1 542 aa22.65■■□□□ 1.22
COL6A1-203ENST00000466285 FGF13Q92913 245 aa22.65■■□□□ 1.22
COL6A1-203ENST00000466285 TARS2Q9BW92 718 aaKnown RBP22.65■■□□□ 1.22
COL6A1-203ENST00000466285 PTPRHQ9HD43 1115 aa22.65■■□□□ 1.22
COL6A1-203ENST00000466285 CACNA1IQ9P0X4 2223 aa22.65■■□□□ 1.22
COL6A1-203ENST00000466285 B3GAT3O94766 335 aa22.64■■□□□ 1.21
COL6A1-203ENST00000466285 U2AF2P26368 475 aaKnown RBP eCLIP22.64■■□□□ 1.21
COL6A1-203ENST00000466285 RAB33AQ14088 237 aa22.64■■□□□ 1.21
COL6A1-203ENST00000466285 SLC5A9Q2M3M2 681 aa22.64■■□□□ 1.21
COL6A1-203ENST00000466285 ZNF568Q3ZCX4 644 aa22.64■■□□□ 1.21
COL6A1-203ENST00000466285 C8orf34Q49A92 452 aa22.64■■□□□ 1.21
COL6A1-203ENST00000466285 AXDND1Q5T1B0 1012 aaPredicted RBP22.64■■□□□ 1.21
COL6A1-203ENST00000466285 KIFAP3Q92845 792 aa22.64■■□□□ 1.21
COL6A1-203ENST00000466285 C18orf25Q96B23 403 aaPredicted RBP22.64■■□□□ 1.21
COL6A1-203ENST00000466285 IFT74Q96LB3 600 aa22.64■■□□□ 1.21
COL6A1-203ENST00000466285 ACO2Q99798 780 aaKnown RBP22.64■■□□□ 1.21
COL6A1-203ENST00000466285 KXD1Q9BQD3 176 aa22.64■■□□□ 1.21
COL6A1-203ENST00000466285 RTP3Q9BQQ7 232 aa22.64■■□□□ 1.21
COL6A1-203ENST00000466285 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.64■■□□□ 1.21
COL6A1-203ENST00000466285 ARHGAP28Q9P2N2 729 aa22.64■■□□□ 1.21
COL6A1-203ENST00000466285 DNMT3BQ9UBC3 853 aaKnown RBP22.64■■□□□ 1.21
COL6A1-203ENST00000466285 CDH7Q9ULB5 785 aa22.64■■□□□ 1.21
COL6A1-203ENST00000466285 TNFSF13BQ9Y275 285 aa22.64■■□□□ 1.21
COL6A1-203ENST00000466285 ANK1P16157 1881 aa22.63■■□□□ 1.21
COL6A1-203ENST00000466285 SMIM28A0A1B0GU29 152 aa22.63■■□□□ 1.21
COL6A1-203ENST00000466285 CCDC169A6NNP5 214 aa22.63■■□□□ 1.21
COL6A1-203ENST00000466285 STK25O00506 426 aa22.63■■□□□ 1.21
COL6A1-203ENST00000466285 MUTP22033 750 aa22.63■■□□□ 1.21
COL6A1-203ENST00000466285 TRAPPC10P48553 1259 aa22.63■■□□□ 1.21
COL6A1-203ENST00000466285 GPC5P78333 572 aa22.63■■□□□ 1.21
COL6A1-203ENST00000466285 RAD51AP2Q09MP3 1159 aa22.63■■□□□ 1.21
COL6A1-203ENST00000466285 GNL2Q13823 731 aaKnown RBP22.63■■□□□ 1.21
COL6A1-203ENST00000466285 SEZ6Q53EL9 994 aa22.63■■□□□ 1.21
COL6A1-203ENST00000466285 NPAS3Q8IXF0 933 aa22.63■■□□□ 1.21
COL6A1-203ENST00000466285 ZBTB45Q96K62 511 aaPredicted RBP22.63■■□□□ 1.21
COL6A1-203ENST00000466285 SNX27Q96L92 541 aa22.63■■□□□ 1.21
COL6A1-203ENST00000466285 R4GN57 208 aa22.63■■□□□ 1.21
COL6A1-203ENST00000466285 TSC2P49815 1807 aa22.62■■□□□ 1.21
COL6A1-203ENST00000466285 SFI1A8K8P3 1242 aa22.62■■□□□ 1.21
COL6A1-203ENST00000466285 CENPBP07199 599 aaPredicted RBP22.62■■□□□ 1.21
COL6A1-203ENST00000466285 HNRNPA1P09651 372 aaKnown RBP eCLIP22.62■■□□□ 1.21
COL6A1-203ENST00000466285 HARSP12081 509 aaKnown RBP22.62■■□□□ 1.21
COL6A1-203ENST00000466285 GRM5P41594 1212 aa22.62■■□□□ 1.21
COL6A1-203ENST00000466285 EFNA5P52803 228 aa22.62■■□□□ 1.21
COL6A1-203ENST00000466285 HMGN5P82970 282 aaKnown RBP22.62■■□□□ 1.21
COL6A1-203ENST00000466285 XKR4Q5GH76 650 aa22.62■■□□□ 1.21
COL6A1-203ENST00000466285 ALKAL1Q6UXT8 129 aa22.62■■□□□ 1.21
COL6A1-203ENST00000466285 FAM184AQ8NB25 1140 aa22.62■■□□□ 1.21
COL6A1-203ENST00000466285 NKD2Q969F2 451 aaPredicted RBP22.62■■□□□ 1.21
COL6A1-203ENST00000466285 PNMA5Q96PV4 448 aa22.62■■□□□ 1.21
COL6A1-203ENST00000466285 SLC2A4RGQ9NR83 387 aa22.62■■□□□ 1.21
COL6A1-203ENST00000466285 NOL7Q9UMY1 257 aaKnown RBP22.62■■□□□ 1.21
COL6A1-203ENST00000466285 K7ERI5 159 aa22.61■■□□□ 1.21
COL6A1-203ENST00000466285 SLC16A4O15374 487 aa22.61■■□□□ 1.21
COL6A1-203ENST00000466285 CD2BP2O95400 341 aaKnown RBP22.61■■□□□ 1.21
COL6A1-203ENST00000466285 PROZP22891 400 aa22.61■■□□□ 1.21
COL6A1-203ENST00000466285 HOXA9P31269 272 aa22.61■■□□□ 1.21
COL6A1-203ENST00000466285 ROR1Q01973 937 aa22.61■■□□□ 1.21
COL6A1-203ENST00000466285 ELAVL2Q12926 359 aaKnown RBP22.61■■□□□ 1.21
COL6A1-203ENST00000466285 RINT1Q6NUQ1 792 aa22.61■■□□□ 1.21
COL6A1-203ENST00000466285 DCLRE1AQ6PJP8 1040 aa22.61■■□□□ 1.21
COL6A1-203ENST00000466285 C1orf186Q6ZWK4 172 aa22.61■■□□□ 1.21
COL6A1-203ENST00000466285 LRRC15Q8TF66 581 aa22.61■■□□□ 1.21
COL6A1-203ENST00000466285 HAPLN2Q9GZV7 340 aa22.61■■□□□ 1.21
COL6A1-203ENST00000466285 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.61■■□□□ 1.21
COL6A1-203ENST00000466285 EP300Q09472 2414 aaPredicted RBP22.6■■□□□ 1.21
COL6A1-203ENST00000466285 WDR27A2RRH5 827 aa22.6■■□□□ 1.21
COL6A1-203ENST00000466285 PODXLO00592 558 aa22.6■■□□□ 1.21
COL6A1-203ENST00000466285 ADSSL1Q8N142 457 aa22.6■■□□□ 1.21
COL6A1-203ENST00000466285 NXPE3Q969Y0 559 aa22.6■■□□□ 1.21
COL6A1-203ENST00000466285 PLIN2Q99541 437 aa22.6■■□□□ 1.21
COL6A1-203ENST00000466285 PLA2G2FQ9BZM2 168 aa22.6■■□□□ 1.21
COL6A1-203ENST00000466285 TUBGCP4Q9UGJ1 667 aa22.6■■□□□ 1.21
COL6A1-203ENST00000466285 MTF2Q9Y483 593 aaPredicted RBP22.6■■□□□ 1.21
COL6A1-203ENST00000466285 TICRRQ7Z2Z1 1910 aa22.59■■□□□ 1.21
COL6A1-203ENST00000466285 NPHP3-ACAD11A0A0J9YXS1 232 aa22.59■■□□□ 1.21
COL6A1-203ENST00000466285 CEBPBP17676 345 aa22.59■■□□□ 1.21
COL6A1-203ENST00000466285 CACNB1Q02641 598 aaPredicted RBP22.59■■□□□ 1.21
COL6A1-203ENST00000466285 SNW1Q13573 536 aaKnown RBP22.59■■□□□ 1.21
COL6A1-203ENST00000466285 VARS2Q5ST30 1063 aaKnown RBP22.59■■□□□ 1.21
COL6A1-203ENST00000466285 MAML2Q8IZL2 1156 aaPredicted RBP22.59■■□□□ 1.21
COL6A1-203ENST00000466285 PJA1Q8NG27 643 aa22.59■■□□□ 1.21
COL6A1-203ENST00000466285 MRPL4Q9BYD3 311 aaKnown RBP22.59■■□□□ 1.21
COL6A1-203ENST00000466285 SH2B1Q9NRF2 756 aaPredicted RBP22.59■■□□□ 1.21
COL6A1-203ENST00000466285 BACE2Q9Y5Z0 518 aa22.59■■□□□ 1.21
COL6A1-203ENST00000466285 DNAH14Q0VDD8 3507 aa22.58■■□□□ 1.21
COL6A1-203ENST00000466285 OTOGLQ3ZCN5 2332 aa22.58■■□□□ 1.21
COL6A1-203ENST00000466285 SEC24AO95486 1093 aa22.58■■□□□ 1.21
COL6A1-203ENST00000466285 CD72P21854 359 aa22.58■■□□□ 1.21
COL6A1-203ENST00000466285 RFX1P22670 979 aa22.58■■□□□ 1.21
COL6A1-203ENST00000466285 DMP1Q13316 513 aaPredicted RBP22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms