RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 TERF2Q15554 542 aa5.33□□□□□ -1.56
USH2A-203ENST00000463147 FAM214AQ32MH5 1076 aa5.33□□□□□ -1.56
USH2A-203ENST00000463147 TMEM240Q5SV17 173 aa5.33□□□□□ -1.56
USH2A-203ENST00000463147 CYB5RLQ6IPT4 315 aa5.33□□□□□ -1.56
USH2A-203ENST00000463147 DRICH1Q6PGQ1 229 aaPredicted RBP5.33□□□□□ -1.56
USH2A-203ENST00000463147 TMED8Q6PL24 325 aaPredicted RBP5.33□□□□□ -1.56
USH2A-203ENST00000463147 ZZZ3Q8IYH5 903 aa5.33□□□□□ -1.56
USH2A-203ENST00000463147 SVIPQ8NHG7 77 aa5.33□□□□□ -1.56
USH2A-203ENST00000463147 PPP1R14CQ8TAE6 165 aa5.33□□□□□ -1.56
USH2A-203ENST00000463147 NOL10Q9BSC4 688 aaKnown RBP5.33□□□□□ -1.56
USH2A-203ENST00000463147 MTG2Q9H4K7 406 aa5.33□□□□□ -1.56
USH2A-203ENST00000463147 SETD1BQ9UPS6 1966 aaKnown RBP5.33□□□□□ -1.56
USH2A-203ENST00000463147 OPHN1O60890 802 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 EIF3JO75822 258 aaKnown RBP5.32□□□□□ -1.56
USH2A-203ENST00000463147 SNUPNO95149 360 aaKnown RBP5.32□□□□□ -1.56
USH2A-203ENST00000463147 ESRRBO95718 433 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 LDHAP00338 332 aaKnown RBP5.32□□□□□ -1.56
USH2A-203ENST00000463147 SESN3P58005 492 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 FAM189BP81408 668 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 MPP3Q13368 585 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 HLTFQ14527 1009 aaKnown RBP eCLIP5.32□□□□□ -1.56
USH2A-203ENST00000463147 GRM3Q14832 879 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 KIAA1841Q6NSI8 718 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 PPP4R4Q6NUP7 873 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 PGM2L1Q6PCE3 622 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 EFHBQ8N7U6 833 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 KIAA1958Q8N8K9 716 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 LMBR1Q8WVP7 490 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 SMG7Q92540 1137 aaKnown RBP5.32□□□□□ -1.56
USH2A-203ENST00000463147 ELF4Q99607 663 aaPredicted RBP5.32□□□□□ -1.56
USH2A-203ENST00000463147 CPEB1Q9BZB8 566 aaKnown RBP5.32□□□□□ -1.56
USH2A-203ENST00000463147 PRDM13Q9H4Q3 707 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 TLK1Q9UKI8 766 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 ANKRD6Q9Y2G4 727 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 FRMD4BQ9Y2L6 1034 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 CHST2Q9Y4C5 530 aa5.32□□□□□ -1.56
USH2A-203ENST00000463147 GOLGA6CA6NDK9 693 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 GOLGA6BA6NDN3 693 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 ZNF185O15231 689 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 GOLGA6DP0CG33 693 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 CCND1P24385 295 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 RECQLP46063 649 aaPredicted RBP5.31□□□□□ -1.56
USH2A-203ENST00000463147 NHLH1Q02575 133 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 C11orf74Q86VG3 221 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 FAM98AQ8NCA5 519 aaKnown RBP5.31□□□□□ -1.56
USH2A-203ENST00000463147 ARPC5LQ9BPX5 153 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 LRFN3Q9BTN0 628 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 DUSP26Q9BV47 211 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 ZNF700Q9H0M5 742 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 ING3Q9NXR8 418 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 GOLGA6AQ9NYA3 693 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 USP36Q9P275 1121 aaKnown RBP5.31□□□□□ -1.56
USH2A-203ENST00000463147 PNMA8BQ9ULN7 279 aaPredicted RBP5.31□□□□□ -1.56
USH2A-203ENST00000463147 SPO11Q9Y5K1 396 aa5.31□□□□□ -1.56
USH2A-203ENST00000463147 TRIM75PA6NK02 468 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 PLIN1O60240 522 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 PRPF6O94906 941 aaKnown RBP5.3□□□□□ -1.56
USH2A-203ENST00000463147 TRIM27P14373 513 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 PTX3P26022 381 aaPredicted RBP5.3□□□□□ -1.56
USH2A-203ENST00000463147 DDX6P26196 483 aaKnown RBP eCLIP5.3□□□□□ -1.56
USH2A-203ENST00000463147 OCRLQ01968 901 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 DUSP2Q05923 314 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 FAPQ12884 760 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 FOXI1Q12951 378 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 IL31Q6EBC2 164 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 B3GNT9Q6UX72 402 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 TSHZ1Q6ZSZ6 1077 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 RASSF3Q86WH2 238 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 SAMD3Q8N6K7 520 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 CPEB3Q8NE35 698 aaKnown RBP5.3□□□□□ -1.56
USH2A-203ENST00000463147 LRGUKQ96M69 825 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 LSM14BQ9BX40 385 aaKnown RBP5.3□□□□□ -1.56
USH2A-203ENST00000463147 ZMAT4Q9H898 229 aa5.3□□□□□ -1.56
USH2A-203ENST00000463147 APAF1O14727 1248 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 NRP2O60462 931 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 CT47B1P0C2W7 299 aaPredicted RBP5.29□□□□□ -1.56
USH2A-203ENST00000463147 CASRP41180 1078 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 NEK3P51956 506 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 PHC1P78364 1004 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 KRT85P78386 507 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 GBX1Q14549 363 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 ESRP1Q6NXG1 681 aaKnown RBP5.29□□□□□ -1.56
USH2A-203ENST00000463147 GPRIN1Q7Z2K8 1008 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 PNMA8AQ86V59 439 aaPredicted RBP5.29□□□□□ -1.56
USH2A-203ENST00000463147 TGFBRAP1Q8WUH2 860 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 RUNDC1Q96C34 613 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 HSPBAP1Q96EW2 488 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 SOX7Q9BT81 388 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 SARGQ9BW04 601 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 MKS1Q9NXB0 559 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 COMMD10Q9Y6G5 202 aa5.29□□□□□ -1.56
USH2A-203ENST00000463147 WASHC2AQ641Q2 1341 aa5.28□□□□□ -1.56
USH2A-203ENST00000463147 MYADML2A6NDP7 307 aa5.28□□□□□ -1.56
USH2A-203ENST00000463147 A6NNZ2 444 aa5.28□□□□□ -1.56
USH2A-203ENST00000463147 GOLGA8AA7E2F4 631 aa5.28□□□□□ -1.56
USH2A-203ENST00000463147 APOL3O95236 402 aa5.28□□□□□ -1.56
USH2A-203ENST00000463147 XPAP23025 273 aaPredicted RBP5.28□□□□□ -1.56
USH2A-203ENST00000463147 CYP2C19P33261 490 aa5.28□□□□□ -1.56
USH2A-203ENST00000463147 FXR1P51114 621 aaKnown RBP eCLIP5.28□□□□□ -1.56
USH2A-203ENST00000463147 RNASE9P60153 205 aaKnown RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms