RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 GPR88Q9GZN0 384 aa13.28□□□□□ -0.28
HDAC4-208ENST00000463007 SLCO1B3Q9NPD5 702 aa13.28□□□□□ -0.28
HDAC4-208ENST00000463007 SEL1LQ9UBV2 794 aa13.28□□□□□ -0.28
HDAC4-208ENST00000463007 SLC12A4Q9UP95 1085 aa13.28□□□□□ -0.28
HDAC4-208ENST00000463007 PASKQ96RG2 1323 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 ASAP2O43150 1006 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 GAS7O60861 476 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 YY1P25490 414 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 CHRNA3P32297 505 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 COPS2P61201 443 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 GPC5P78333 572 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 DHX34Q14147 1143 aaKnown RBP13.27□□□□□ -0.28
HDAC4-208ENST00000463007 NIPA1Q7RTP0 329 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 ZNF720Q7Z2F6 126 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 LARGE2Q8N3Y3 721 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 ZNF570Q96NI8 536 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 MXRA8Q9BRK3 442 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 PI4K2AQ9BTU6 479 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 TXLNGYQ9BZA5 131 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 ALG13Q9NP73 1137 aaKnown RBP13.27□□□□□ -0.28
HDAC4-208ENST00000463007 NOP53Q9NZM5 478 aaKnown RBP13.27□□□□□ -0.28
HDAC4-208ENST00000463007 HAO1Q9UJM8 370 aa13.27□□□□□ -0.28
HDAC4-208ENST00000463007 SYNGAP1Q96PV0 1343 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 LCTP09848 1927 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 CLGNO14967 610 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 SORBS3O60504 671 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 NUDT17P0C025 328 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 MSH2P43246 934 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 ITGA8P53708 1063 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 RFX8Q6ZV50 586 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 C4orf33Q8N1A6 199 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 HAUS1Q96CS2 278 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 FAXDC2Q96IV6 333 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 MKNK1Q9BUB5 465 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 WDR11Q9BZH6 1224 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 KLHL14Q9P2G3 628 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 USP20Q9Y2K6 914 aa13.27□□□□□ -0.29
HDAC4-208ENST00000463007 A0A0A6YYK5 440 aaPredicted RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 FAM187AA6NFU0 413 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 CHRNB2P17787 502 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 LACTBP83111 547 aaPredicted RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 CXCL9Q07325 125 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 TAF11Q15544 211 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 LMBRD2Q68DH5 695 aaPredicted RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 BZW1Q7L1Q6 419 aaKnown RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 MIGA2Q7L4E1 593 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 SLC13A5Q86YT5 568 aaPredicted RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 IL31RAQ8NI17 732 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 KIFC3Q9BVG8 833 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 PITPNM3Q9BZ71 974 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 ZMYND8Q9ULU4 1186 aaPredicted RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 GOLGA8SH3BPF8 625 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 GOLGA8MH3BSY2 632 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 O00370 1275 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 CETPP11597 493 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 ANXA13P27216 316 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 ATP11AP98196 1134 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 BFSP1Q12934 665 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 NOP9Q86U38 636 aaKnown RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 PASD1Q8IV76 773 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 OGFOD1Q8N543 542 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 EIF1ADQ8N9N8 165 aaKnown RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 C3orf20Q8ND61 904 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 SEC14L1Q92503 715 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 ERP27Q96DN0 273 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 AGBL1Q96MI9 1066 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 TOPORSQ9NS56 1045 aaPredicted RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 NKIRAS1Q9NYS0 192 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 ANAPC7Q9UJX3 599 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 RASA4BC9J798 803 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 RASA4O43374 803 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 KIF1CO43896 1103 aaKnown RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 GJB6O95452 261 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 ASNSP08243 561 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 GHRP10912 638 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 ZNF280AP59817 542 aaPredicted RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 INTS8Q75QN2 995 aaKnown RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 SLC9A9Q8IVB4 645 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 C12orf65Q9H3J6 166 aaKnown RBP13.26□□□□□ -0.29
HDAC4-208ENST00000463007 GPRC5CQ9NQ84 441 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 UBIAD1Q9Y5Z9 338 aa13.26□□□□□ -0.29
HDAC4-208ENST00000463007 ARHGEF35A5YM69 484 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 IPO5O00410 1097 aaKnown RBP13.25□□□□□ -0.29
HDAC4-208ENST00000463007 PODXLO00592 558 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 NFIBO00712 420 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 RARGP13631 454 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 PCK1P35558 622 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 SPP2Q13103 211 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 CPA5Q8WXQ8 436 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 NACC1Q96RE7 527 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 ZNF577Q9BSK1 485 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 NKX1-2Q9UD57 310 aaPredicted RBP13.25□□□□□ -0.29
HDAC4-208ENST00000463007 INTUQ9ULD6 942 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 HIP1RO75146 1068 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 MRPS9P82933 396 aaKnown RBP13.25□□□□□ -0.29
HDAC4-208ENST00000463007 ITIH4Q14624 930 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 CRYMQ14894 314 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 TLDC1Q6P9B6 456 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 VSTM1Q6UX27 236 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 ACSF2Q96CM8 615 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms