RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 DDX53Q86TM3 631 aaKnown RBP24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 CD302Q8IX05 232 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 GPD1LQ8N335 351 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 UROC1Q96N76 676 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 TCF25Q9BQ70 676 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 GOLGA2P5Q9HBQ8 144 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 HSPBP1Q9NZL4 362 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 CGNQ9P2M7 1197 aaKnown RBP24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 STK39Q9UEW8 545 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 PCDHA5Q9Y5H7 936 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 REV3LO60673 3130 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 COL6A3P12111 3177 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 F8W810 466 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 CLIC2O15247 247 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 EXTL3O43909 919 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 IRS1P35568 1242 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 CYP2J2P51589 502 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 ERVFC1P60507 584 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 SOX4Q06945 474 aaPredicted RBP24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 BMS1Q14692 1282 aaKnown RBP24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 PLPP4Q5VZY2 271 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 PDE12Q6L8Q7 609 aaKnown RBP24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 CRELD2Q6UXH1 353 aaPredicted RBP24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 TMC7Q7Z402 723 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 VPS52Q8N1B4 723 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 ZSWIM2Q8NEG5 633 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 GOLGA5Q8TBA6 731 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 HASPINQ8TF76 798 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 PPP2R3CQ969Q6 453 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 C18orf25Q96B23 403 aaPredicted RBP24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 ADAM28Q9UKQ2 775 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 MAPK8IP1Q9UQF2 711 aa24.83■■□□□ 1.57
CCDC28B-203ENST00000461819 XPOTO43592 962 aaKnown RBP24.82■■□□□ 1.56
CCDC28B-203ENST00000461819 TADA2AO75478 443 aa24.82■■□□□ 1.56
CCDC28B-203ENST00000461819 KIF4AO95239 1232 aa24.82■■□□□ 1.56
CCDC28B-203ENST00000461819 CLCNKBP51801 687 aa24.82■■□□□ 1.56
CCDC28B-203ENST00000461819 POU5F1Q01860 360 aaKnown RBP24.82■■□□□ 1.56
CCDC28B-203ENST00000461819 SKIV2LQ15477 1246 aaKnown RBP24.82■■□□□ 1.56
CCDC28B-203ENST00000461819 TSPAN18Q96SJ8 248 aa24.82■■□□□ 1.56
CCDC28B-203ENST00000461819 RBAKQ9NYW8 714 aaPredicted RBP24.82■■□□□ 1.56
CCDC28B-203ENST00000461819 TUBGCP4Q9UGJ1 667 aa24.82■■□□□ 1.56
CCDC28B-203ENST00000461819 UBQLN1Q9UMX0 589 aaKnown RBP24.82■■□□□ 1.56
CCDC28B-203ENST00000461819 PCDHGC5Q9Y5F6 944 aa24.82■■□□□ 1.56
CCDC28B-203ENST00000461819 IL18RAPO95256 599 aa24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 ADRB2P07550 413 aa24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 SMC1AQ14683 1233 aaKnown RBP24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 TMEM132DQ14C87 1099 aa24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 TCEAL5Q5H9L2 206 aa24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 JADE1Q6IE81 842 aa24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 BRSK2Q8IWQ3 736 aa24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 SPATA20Q8TB22 786 aa24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 DDX27Q96GQ7 796 aaKnown RBP24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 VN1R3Q9BXE9 311 aa24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 ZBP1Q9H171 429 aa24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 ASB7Q9H672 318 aa24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 NGRNQ9NPE2 291 aaKnown RBP24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 LMBRD1Q9NUN5 540 aa24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 GTF3C5Q9Y5Q8 519 aaPredicted RBP24.81■■□□□ 1.56
CCDC28B-203ENST00000461819 FSCN2O14926 492 aa24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 SLC34A2O95436 690 aa24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 NFICP08651 508 aa24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 UPP1Q16831 310 aa24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 ZNF658Q5TYW1 1059 aaPredicted RBP24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 FUT10Q6P4F1 479 aa24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 SMYD4Q8IYR2 804 aaPredicted RBP24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 GUF1Q8N442 669 aaKnown RBP24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 GTPBP4Q9BZE4 634 aaKnown RBP24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 KCTD10Q9H3F6 313 aa24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 KIAA1586Q9HCI6 787 aa24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 DERAQ9Y315 318 aa24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 SF3B1O75533 1304 aaKnown RBP eCLIP24.8■■□□□ 1.56
CCDC28B-203ENST00000461819 PODXLO00592 558 aa24.79■■□□□ 1.56
CCDC28B-203ENST00000461819 B3GAT3O94766 335 aa24.79■■□□□ 1.56
CCDC28B-203ENST00000461819 SOD2P04179 222 aa24.79■■□□□ 1.56
CCDC28B-203ENST00000461819 RPL9P32969 192 aaKnown RBP24.79■■□□□ 1.56
CCDC28B-203ENST00000461819 DCLRE1AQ6PJP8 1040 aa24.79■■□□□ 1.56
CCDC28B-203ENST00000461819 C12orf56Q8IXR9 622 aa24.79■■□□□ 1.56
CCDC28B-203ENST00000461819 XXYLT1Q8NBI6 393 aa24.79■■□□□ 1.56
CCDC28B-203ENST00000461819 BEST2Q8NFU1 509 aa24.79■■□□□ 1.56
CCDC28B-203ENST00000461819 HERC2P3Q9BVR0 1158 aa24.79■■□□□ 1.56
CCDC28B-203ENST00000461819 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP24.78■■□□□ 1.56
CCDC28B-203ENST00000461819 ZNF233A6NK53 670 aa24.78■■□□□ 1.56
CCDC28B-203ENST00000461819 PDXKO00764 312 aa24.78■■□□□ 1.56
CCDC28B-203ENST00000461819 CALUO43852 315 aaPredicted RBP24.78■■□□□ 1.56
CCDC28B-203ENST00000461819 CTSAP10619 480 aa24.78■■□□□ 1.56
CCDC28B-203ENST00000461819 CAMK4Q16566 473 aa24.78■■□□□ 1.56
CCDC28B-203ENST00000461819 ADGRD2Q7Z7M1 963 aa24.78■■□□□ 1.56
CCDC28B-203ENST00000461819 CBWD2Q8IUF1 395 aa24.78■■□□□ 1.56
CCDC28B-203ENST00000461819 AUTS2Q8WXX7 1259 aa24.78■■□□□ 1.56
CCDC28B-203ENST00000461819 MAN1B1Q9UKM7 699 aa24.78■■□□□ 1.56
CCDC28B-203ENST00000461819 C2CD2Q9Y426 696 aa24.78■■□□□ 1.56
CCDC28B-203ENST00000461819 VWA8A3KMH1 1905 aa24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 TMEM189-UBE2V1I3L0A0 370 aa24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 EXOC3O60645 756 aa24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 CXCL14O95715 111 aa24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 URODP06132 367 aa24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 CYP3A5P20815 502 aa24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 ZBTB6Q15916 424 aa24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 SNRNP35Q16560 246 aaKnown RBP24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 ISM2Q6H9L7 571 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms