RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 KIF4AO95239 1232 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 MYL1P05976 194 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 HOXD13P35453 343 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 FAM160A1Q05DH4 1040 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 ARMCX5Q6P1M9 558 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 FUT10Q6P4F1 479 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 TMEM130Q8N3G9 435 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 MRPL43Q8N983 215 aaKnown RBP20.31■□□□□ 0.84
SHH-203ENST00000435425 TMEM87AQ8NBN3 555 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 ZSWIM2Q8NEG5 633 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 ZNF507Q8TCN5 953 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 CCDC47Q96A33 483 aaKnown RBP20.31■□□□□ 0.84
SHH-203ENST00000435425 CCDC34Q96HJ3 373 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 IPO9Q96P70 1041 aaKnown RBP20.31■□□□□ 0.84
SHH-203ENST00000435425 CBWD1Q9BRT8 395 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 FAM213AQ9BRX8 229 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 GPR62Q9BZJ7 368 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 PLEKHA5Q9HAU0 1116 aa20.31■□□□□ 0.84
SHH-203ENST00000435425 REV3LO60673 3130 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 TTC26A0AVF1 554 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 C2orf71A6NGG8 1288 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 SOD2P04179 222 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 CTSAP10619 480 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 IGFBP6P24592 240 aaPredicted RBP20.3■□□□□ 0.84
SHH-203ENST00000435425 DPYDQ12882 1025 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 SNW1Q13573 536 aaKnown RBP20.3■□□□□ 0.84
SHH-203ENST00000435425 KANK3Q6NY19 840 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 ENGASEQ8NFI3 743 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 SCFD1Q8WVM8 642 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 B3GALT6Q96L58 329 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 HERC2P3Q9BVR0 1158 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 UBE2ZQ9H832 354 aaPredicted RBP20.3■□□□□ 0.84
SHH-203ENST00000435425 TUBGCP4Q9UGJ1 667 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 COG5Q9UP83 839 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 EYSQ5T1H1 3165 aa20.3■□□□□ 0.84
SHH-203ENST00000435425 B3GAT3O94766 335 aa20.29■□□□□ 0.84
SHH-203ENST00000435425 GARTP22102 1010 aa20.29■□□□□ 0.84
SHH-203ENST00000435425 KCNA5P22460 613 aa20.29■□□□□ 0.84
SHH-203ENST00000435425 STK4Q13043 487 aa20.29■□□□□ 0.84
SHH-203ENST00000435425 PSMD2Q13200 908 aa20.29■□□□□ 0.84
SHH-203ENST00000435425 PNOCQ13519 176 aa20.29■□□□□ 0.84
SHH-203ENST00000435425 DUSP6Q16828 381 aa20.29■□□□□ 0.84
SHH-203ENST00000435425 KIAA1841Q6NSI8 718 aa20.29■□□□□ 0.84
SHH-203ENST00000435425 LLGL2Q6P1M3 1020 aa20.29■□□□□ 0.84
SHH-203ENST00000435425 DCLRE1AQ6PJP8 1040 aa20.29■□□□□ 0.84
SHH-203ENST00000435425 PABPC5Q96DU9 382 aaKnown RBP20.29■□□□□ 0.84
SHH-203ENST00000435425 UROC1Q96N76 676 aa20.29■□□□□ 0.84
SHH-203ENST00000435425 UBE4BO95155 1302 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 PODXLO00592 558 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 CLIC2O15247 247 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 NCK2O43639 380 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 URODP06132 367 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 GLUD2P49448 558 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 RBM10P98175 930 aaKnown RBP20.28■□□□□ 0.84
SHH-203ENST00000435425 ADAM15Q13444 863 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 PTPN14Q15678 1187 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 UPP1Q16831 310 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 JADE1Q6IE81 842 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 CRELD2Q6UXH1 353 aaPredicted RBP20.28■□□□□ 0.84
SHH-203ENST00000435425 CEP57Q86XR8 500 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 KIAA0895Q8NCT3 520 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 MRPL17Q9NRX2 175 aaKnown RBP20.28■□□□□ 0.84
SHH-203ENST00000435425 STK39Q9UEW8 545 aa20.28■□□□□ 0.84
SHH-203ENST00000435425 SF3B1O75533 1304 aaKnown RBP eCLIP20.27■□□□□ 0.84
SHH-203ENST00000435425 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.27■□□□□ 0.84
SHH-203ENST00000435425 H3BQ06 376 aaPredicted RBP20.27■□□□□ 0.84
SHH-203ENST00000435425 TGFB1I1O43294 461 aa20.27■□□□□ 0.84
SHH-203ENST00000435425 LDHAP00338 332 aaKnown RBP20.27■□□□□ 0.84
SHH-203ENST00000435425 BRCC3P46736 316 aa20.27■□□□□ 0.84
SHH-203ENST00000435425 NDUFV1P49821 464 aa20.27■□□□□ 0.84
SHH-203ENST00000435425 GUCY2FP51841 1108 aa20.27■□□□□ 0.84
SHH-203ENST00000435425 DLX2Q07687 328 aaPredicted RBP20.27■□□□□ 0.84
SHH-203ENST00000435425 CLUL1Q15846 466 aa20.27■□□□□ 0.84
SHH-203ENST00000435425 FAM171A1Q5VUB5 890 aa20.27■□□□□ 0.84
SHH-203ENST00000435425 CD302Q8IX05 232 aa20.27■□□□□ 0.84
SHH-203ENST00000435425 EFHBQ8N7U6 833 aa20.27■□□□□ 0.84
SHH-203ENST00000435425 C3orf58Q8NDZ4 430 aa20.27■□□□□ 0.84
SHH-203ENST00000435425 ERCC4Q92889 916 aaPredicted RBP20.27■□□□□ 0.84
SHH-203ENST00000435425 DDX27Q96GQ7 796 aaKnown RBP20.27■□□□□ 0.84
SHH-203ENST00000435425 UBQLN1Q9UMX0 589 aaKnown RBP20.27■□□□□ 0.84
SHH-203ENST00000435425 I3L4J1 428 aa20.26■□□□□ 0.83
SHH-203ENST00000435425 XPOTO43592 962 aaKnown RBP20.26■□□□□ 0.83
SHH-203ENST00000435425 EXTL3O43909 919 aa20.26■□□□□ 0.83
SHH-203ENST00000435425 CLASP2O75122 1294 aaKnown RBP20.26■□□□□ 0.83
SHH-203ENST00000435425 PRPF40AO75400 957 aaKnown RBP20.26■□□□□ 0.83
SHH-203ENST00000435425 EFEMP2O95967 443 aa20.26■□□□□ 0.83
SHH-203ENST00000435425 NFICP08651 508 aa20.26■□□□□ 0.83
SHH-203ENST00000435425 MRPS5P82675 430 aaKnown RBP20.26■□□□□ 0.83
SHH-203ENST00000435425 TMEM132DQ14C87 1099 aa20.26■□□□□ 0.83
SHH-203ENST00000435425 KNOP1Q1ED39 458 aaKnown RBP20.26■□□□□ 0.83
SHH-203ENST00000435425 USP41Q3LFD5 358 aa20.26■□□□□ 0.83
SHH-203ENST00000435425 RNF168Q8IYW5 571 aaPredicted RBP20.26■□□□□ 0.83
SHH-203ENST00000435425 GPD1LQ8N335 351 aa20.26■□□□□ 0.83
SHH-203ENST00000435425 ATXN2LQ8WWM7 1075 aaKnown RBP20.26■□□□□ 0.83
SHH-203ENST00000435425 RIN2Q8WYP3 895 aaPredicted RBP20.26■□□□□ 0.83
SHH-203ENST00000435425 CDCA3Q99618 268 aaPredicted RBP20.26■□□□□ 0.83
SHH-203ENST00000435425 AGPAT3Q9NRZ7 376 aa20.26■□□□□ 0.83
SHH-203ENST00000435425 RBAKQ9NYW8 714 aaPredicted RBP20.26■□□□□ 0.83
SHH-203ENST00000435425 HSPBP1Q9NZL4 362 aa20.26■□□□□ 0.83
SHH-203ENST00000435425 BARX2Q9UMQ3 279 aaPredicted RBP20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms