RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 FTH1P19P0C7X4 201 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 TRIM23P36406 574 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 WASP42768 502 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ERVFC1P60507 584 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 PSMC6P62333 389 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC102BQ68D86 513 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SCYL2Q6P3W7 929 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 GPR135Q8IZ08 494 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SPEM1Q8N4L4 309 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 GDAP1Q8TB36 358 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ADAMTS18Q8TE60 1221 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SGF29Q96ES7 293 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 FEM1CQ96JP0 617 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ZFRQ96KR1 1074 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SH2D3AQ9BRG2 576 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC25A23Q9BV35 468 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 KRTAP3-3Q9BYR6 98 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 KRTAP3-2Q9BYR7 98 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 PHACTR1Q9C0D0 580 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 PRKRIP1Q9H875 184 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 KANSL2Q9H9L4 492 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 NCKIPSDQ9NZQ3 722 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CTTNBP2NLQ9P2B4 639 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ARPP21Q9UBL0 812 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ADAMTS8Q9UP79 889 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ASCC3Q8N3C0 2202 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 FRMPD1Q5SYB0 1578 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC66A2RUB6 948 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ERVV-1B6SEH8 477 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 KIAA0355O15063 1070 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 RNMTO43148 476 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 FGF18O76093 207 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CCNB2O95067 398 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 BCL10O95999 233 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ADH1CP00326 375 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 IGHEP01854 428 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ADD1P35611 737 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 TSTA3Q13630 321 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SAFBQ15424 915 aaKnown RBP eCLIP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 LACTB2Q53H82 288 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 IER5LQ5T953 404 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 MEI1Q5TIA1 1274 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 DPY19L2P1Q6NXN4 242 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 BORAQ6PGQ7 559 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 TADA2BQ86TJ2 420 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 RHOT1Q8IXI2 618 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 DEPDC4Q8N2C3 294 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 TRIB2Q92519 343 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 RMND5BQ96G75 393 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ALS2CR12Q96Q35 445 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 KCNK17Q96T54 332 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ZSWIM1Q9BR11 485 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 BDH2Q9BUT1 245 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC94Q9BW85 323 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC25A18Q9H1K4 315 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 PLEKHA4Q9H4M7 779 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CRTAC1Q9NQ79 661 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SOHLH2Q9NX45 425 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CLIP2Q9UDT6 1046 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 HCN2Q9UL51 889 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 POLHQ9Y253 713 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 USTQ9Y2C2 406 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SOS1Q07889 1333 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ZNF891A8MT65 544 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 KLRC4-KLRK1H3BQV0 150 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 DDX39AO00148 427 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 IKBKBO14920 756 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CCL16O15467 120 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 YKT6O15498 198 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ADCY6O43306 1168 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 TPD52L2O43399 206 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 GRID2O43424 1007 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 N4BP1O75113 896 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 RGS9O75916 674 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SPATA31D3P0C874 917 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 PRKAR2BP31323 418 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 KLRB1Q12918 225 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 BNIP3Q12983 259 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 KBTBD12Q3ZCT8 623 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 AMZ1Q400G9 498 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 FNDC3BQ53EP0 1204 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 C17orf107Q6ZR85 190 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SPATA31D4Q6ZUB0 917 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 PIK3AP1Q6ZUJ8 805 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 EFHBQ8N7U6 833 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ZNF366Q8N895 744 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 NANOS1Q8WY41 292 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SEC14L1Q92503 715 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ZDHHC16Q969W1 377 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 KIF1BPQ96EK5 621 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SIPA1Q96FS4 1042 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 PWWP2AQ96N64 755 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 TMEM74Q96NL1 305 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 GFM1Q96RP9 751 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ADAM2Q99965 735 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC13A1Q9BZW2 595 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ARHGEF4Q9NR80 690 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 CPSF3Q9UKF6 684 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 INTS6Q9UL03 887 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 COPG1Q9Y678 874 aaKnown RBP2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms