RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 ERP44Q9BS26 406 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 EPN3Q9H201 632 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 LRRC4CQ9HCJ2 640 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 KMT5AQ9NQR1 393 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 PDGFCQ9NRA1 345 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 GABBR1Q9UBS5 961 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 SLC9A2Q9UBY0 812 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 SMIM23A6NLE4 172 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 DCDC2CA8MYV0 355 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 ERLIN2O94905 339 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 KRT5P13647 590 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 TMOD1P28289 359 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 JAK3P52333 1124 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 MFAP3P55082 362 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 KRT76Q01546 638 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 MKRN4PQ13434 485 aaPredicted RBP11.44□□□□□ -0.58
CUX1-205ENST00000425244 GPR142Q7Z601 462 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 C12orf56Q8IXR9 622 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 C4orf19Q8IY42 314 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 MICALL1Q8N3F8 863 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 TAS1R2Q8TE23 839 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 POMGNT1Q8WZA1 660 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 CEP170P1Q96L14 293 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 FGD4Q96M96 766 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 NUP85Q9BW27 656 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 NOCTQ9UK39 431 aaKnown RBP11.44□□□□□ -0.58
CUX1-205ENST00000425244 EXOC7Q9UPT5 735 aa11.44□□□□□ -0.58
CUX1-205ENST00000425244 SYNGAP1Q96PV0 1343 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 SPATA31C2B4DYI2 1134 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 CNGA1P29973 690 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 ACTR2P61160 394 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 GJC2Q5T442 439 aaPredicted RBP11.43□□□□□ -0.58
CUX1-205ENST00000425244 SEL1L2Q5TEA6 688 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 KRT39Q6A163 491 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 C11orf63Q6NUN7 778 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 ANO5Q75V66 913 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 PHLDB2Q86SQ0 1253 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 EFCAB13Q8IY85 973 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 FAM71AQ8IYT1 594 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 ARFGAP2Q8N6H7 521 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 TMEM161BQ8NDZ6 487 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 ZNF564Q8TBZ8 553 aaPredicted RBP11.43□□□□□ -0.58
CUX1-205ENST00000425244 PPM1EQ8WY54 764 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 BSNDQ8WZ55 320 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 BICD1Q96G01 975 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 CDHR1Q96JP9 859 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 PI4K2AQ9BTU6 479 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 TRPC6Q9Y210 931 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 PTPN22Q9Y2R2 807 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 PCDHA10Q9Y5I2 948 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 DOCK3Q8IZD9 2030 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 MANSC4A6NHS7 340 aaPredicted RBP11.43□□□□□ -0.58
CUX1-205ENST00000425244 TMEM88BA6NKF7 163 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 MIF4GDA9UHW6 222 aaKnown RBP11.43□□□□□ -0.58
CUX1-205ENST00000425244 BHMG1C9JSJ3 638 aaPredicted RBP11.43□□□□□ -0.58
CUX1-205ENST00000425244 MAFGO15525 162 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 LYPLA2O95372 231 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 ARIH2O95376 493 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 UBA1P22314 1058 aaKnown RBP11.43□□□□□ -0.58
CUX1-205ENST00000425244 PDE6CP51160 858 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 NCKAP1LP55160 1127 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 MAGOHP61326 146 aaKnown RBP11.43□□□□□ -0.58
CUX1-205ENST00000425244 NLRP14Q86W24 1093 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 UHMK1Q8TAS1 419 aaKnown RBP11.43□□□□□ -0.58
CUX1-205ENST00000425244 COPS5Q92905 334 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 NT5C1BQ96P26 610 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 RASAL2Q9UJF2 1139 aa11.43□□□□□ -0.58
CUX1-205ENST00000425244 DNAJC25-GNG10A0A024R161 153 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 TCRBV7S2A1N4TA0A589 114 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 TLDC2A0PJX2 215 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 HNRNPDLO14979 420 aaKnown RBP11.42□□□□□ -0.58
CUX1-205ENST00000425244 GGPS1O95749 300 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 PYGMP11217 842 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 CYP11B1P15538 503 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 FMO1Q01740 532 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 PPP2R5EQ16537 467 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 TTC31Q49AM3 519 aaPredicted RBP11.42□□□□□ -0.58
CUX1-205ENST00000425244 DUPD1Q68J44 220 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 IFNL1Q8IU54 200 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 CCDC60Q8IWA6 550 aaPredicted RBP11.42□□□□□ -0.58
CUX1-205ENST00000425244 PRELID2Q8N945 189 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 FBXO25Q8TCJ0 367 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 ZNF473Q8WTR7 871 aaKnown RBP11.42□□□□□ -0.58
CUX1-205ENST00000425244 SEC14L1Q92503 715 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 VTI1AQ96AJ9 217 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 CCT8L2Q96SF2 557 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 MPHOSPH6Q99547 160 aaKnown RBP11.42□□□□□ -0.58
CUX1-205ENST00000425244 USP20Q9Y2K6 914 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 SLC45A1Q9Y2W3 748 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 TLL2Q9Y6L7 1015 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 PHF2O75151 1096 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 STAM2O75886 525 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 KIAA0754O94854 1291 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 SLC10A3P09131 477 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 BIRC3Q13489 604 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 FAM110CQ1W6H9 321 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 LMBRD2Q68DH5 695 aaPredicted RBP11.42□□□□□ -0.58
CUX1-205ENST00000425244 FAM43BQ6ZT52 329 aaPredicted RBP11.42□□□□□ -0.58
CUX1-205ENST00000425244 B4GALNT4Q76KP1 1039 aa11.42□□□□□ -0.58
CUX1-205ENST00000425244 ARMCX2Q7L311 632 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms