RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 HINFPQ9BQA5 517 aa22.23■■□□□ 1.15
USP39-203ENST00000409470 FZD8Q9H461 694 aa22.23■■□□□ 1.15
USP39-203ENST00000409470 MAP2K7O14733 419 aa22.22■■□□□ 1.15
USP39-203ENST00000409470 MAPK4P31152 587 aa22.22■■□□□ 1.15
USP39-203ENST00000409470 HADHBP55084 474 aaKnown RBP22.22■■□□□ 1.15
USP39-203ENST00000409470 BPIFB4P59827 614 aa22.22■■□□□ 1.15
USP39-203ENST00000409470 GRM1Q13255 1194 aa22.22■■□□□ 1.15
USP39-203ENST00000409470 CUL2Q13617 745 aa22.22■■□□□ 1.15
USP39-203ENST00000409470 NCOA4Q13772 614 aa22.22■■□□□ 1.15
USP39-203ENST00000409470 ZNF568Q3ZCX4 644 aa22.22■■□□□ 1.15
USP39-203ENST00000409470 GLE1Q53GS7 698 aaKnown RBP22.22■■□□□ 1.15
USP39-203ENST00000409470 ACTRT1Q8TDG2 376 aa22.22■■□□□ 1.15
USP39-203ENST00000409470 RUBCNQ92622 972 aa22.22■■□□□ 1.15
USP39-203ENST00000409470 IMPG2Q9BZV3 1241 aa22.22■■□□□ 1.15
USP39-203ENST00000409470 APOBEC3GQ9HC16 384 aaKnown RBP22.22■■□□□ 1.15
USP39-203ENST00000409470 DMGDHQ9UI17 866 aaKnown RBP22.22■■□□□ 1.15
USP39-203ENST00000409470 MAGEB2O15479 319 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 CALCAP01258 141 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 TCEAL1Q15170 157 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 CCNI2Q6ZMN8 369 aaPredicted RBP22.21■■□□□ 1.15
USP39-203ENST00000409470 ZHX1Q9UKY1 873 aaPredicted RBP22.21■■□□□ 1.15
USP39-203ENST00000409470 PCDHB2Q9Y5E7 798 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 EVPLQ92817 2033 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 PGRMC1O00264 195 aaKnown RBP22.21■■□□□ 1.15
USP39-203ENST00000409470 ABLIM1O14639 778 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 B4GALT5O43286 388 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 PPFIA4O75335 1185 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 PHKA2P46019 1235 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 TNNC1P63316 161 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 NOP14P78316 857 aaKnown RBP22.21■■□□□ 1.15
USP39-203ENST00000409470 MBTD1Q05BQ5 628 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 SURF1Q15526 300 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 THNSL1Q8IYQ7 743 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 ZNF653Q96CK0 615 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 KRT12Q99456 494 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 TINF2Q9BSI4 451 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 STIM2Q9P246 746 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 CPSF3Q9UKF6 684 aaKnown RBP22.21■■□□□ 1.15
USP39-203ENST00000409470 PCDHB4Q9Y5E5 795 aa22.21■■□□□ 1.15
USP39-203ENST00000409470 ATMINO43313 823 aaPredicted RBP22.2■■□□□ 1.14
USP39-203ENST00000409470 CLTAP09496 248 aa22.2■■□□□ 1.14
USP39-203ENST00000409470 TBXAS1P24557 533 aaPredicted RBP22.2■■□□□ 1.14
USP39-203ENST00000409470 TNNT3P45378 269 aaPredicted RBP22.2■■□□□ 1.14
USP39-203ENST00000409470 CASP8Q14790 479 aa22.2■■□□□ 1.14
USP39-203ENST00000409470 ACAD10Q6JQN1 1059 aa22.2■■□□□ 1.14
USP39-203ENST00000409470 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.2■■□□□ 1.143e-12■■□□□ 13.8
USP39-203ENST00000409470 ABHD16BQ9H3Z7 469 aa22.2■■□□□ 1.14
USP39-203ENST00000409470 MINDY3Q9H8M7 445 aa22.2■■□□□ 1.14
USP39-203ENST00000409470 CHORDC1Q9UHD1 332 aaPredicted RBP22.2■■□□□ 1.14
USP39-203ENST00000409470 AKT3Q9Y243 479 aa22.2■■□□□ 1.14
USP39-203ENST00000409470 NUB1Q9Y5A7 615 aa22.2■■□□□ 1.14
USP39-203ENST00000409470 TMEM110-MUSTN1A8MSY1 372 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 ECM2O94769 699 aaPredicted RBP22.19■■□□□ 1.14
USP39-203ENST00000409470 SMPD1P17405 629 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 PROZP22891 400 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 ACVR2BQ13705 512 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 CLEC16AQ2KHT3 1053 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 C11orf63Q6NUN7 778 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 CDR2LQ86X02 465 aaPredicted RBP22.19■■□□□ 1.14
USP39-203ENST00000409470 ZNF677Q86XU0 584 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 GSPT2Q8IYD1 628 aaKnown RBP22.19■■□□□ 1.14
USP39-203ENST00000409470 C16orf70Q9BSU1 422 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 MTMR12Q9C0I1 747 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 PTPRHQ9HD43 1115 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 NOC2LQ9Y3T9 749 aaKnown RBP22.19■■□□□ 1.14
USP39-203ENST00000409470 A0A0U1RQG5 324 aaPredicted RBP22.19■■□□□ 1.14
USP39-203ENST00000409470 H3BRB1 525 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 TMOD1P28289 359 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 OSTNP61366 133 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 SMC1AQ14683 1233 aaKnown RBP22.19■■□□□ 1.14
USP39-203ENST00000409470 DUOXA2Q1HG44 320 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 DUSP28Q4G0W2 176 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 OR6J1Q8NGC5 347 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 PPP1R16BQ96T49 567 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 NUP85Q9BW27 656 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 NFKBIZQ9BYH8 718 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 TUT1Q9H6E5 874 aaKnown RBP22.19■■□□□ 1.14
USP39-203ENST00000409470 PRMT7Q9NVM4 692 aaPredicted RBP22.19■■□□□ 1.14
USP39-203ENST00000409470 CPA4Q9UI42 421 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 GTF3C4Q9UKN8 822 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 ALG6Q9Y672 507 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 COL1A2P08123 1366 aa22.19■■□□□ 1.14
USP39-203ENST00000409470 SLC15A5A6NIM6 579 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 DDX3YO15523 660 aaKnown RBP22.18■■□□□ 1.14
USP39-203ENST00000409470 CYP1A2P05177 515 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 MYBL2P10244 700 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 ACO1P21399 889 aaKnown RBP22.18■■□□□ 1.14
USP39-203ENST00000409470 HUNKP57058 714 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 EEF1DP3Q658K8 133 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 TMEM270Q6UE05 265 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 KLHL7Q8IXQ5 586 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 RASGEF1CQ8N431 466 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 NPLOC4Q8TAT6 608 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 SLC5A4Q9NY91 659 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 TMEM59LQ9UK28 342 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 UMODL1Q5DID0 1318 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 CST3P01034 146 aaPredicted RBP22.18■■□□□ 1.14
USP39-203ENST00000409470 TFAMQ00059 246 aaKnown RBP22.18■■□□□ 1.14
USP39-203ENST00000409470 MESDQ14696 234 aa22.18■■□□□ 1.14
USP39-203ENST00000409470 CST9Q5W186 159 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms