RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 CKAP2Q8WWK9 683 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 AGPAT1Q99943 283 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 DNAJC18Q9H819 358 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 MTMR4Q9NYA4 1195 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 PARP2Q9UGN5 583 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 TRAF3IP3Q9Y228 551 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 FRMD4BQ9Y2L6 1034 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 SYNGAP1Q96PV0 1343 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 BCL9O00512 1426 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 PPEF1O14829 653 aaPredicted RBP10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 UNC5CO95185 931 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 OVGP1Q12889 678 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 SF3B3Q15393 1217 aaKnown RBP10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 NBPF20Q3BBV1 942 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 EPM2AIP1Q7L775 607 aaPredicted RBP10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 SLC13A5Q86YT5 568 aaPredicted RBP10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 ANKLE1Q8NAG6 615 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 FAM13CQ8NE31 585 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 WDR66Q8TBY9 1149 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 RUNDC3BQ96NL0 473 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 ANO3Q9BYT9 981 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 CNOT7Q9UIV1 285 aaKnown RBP10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 SNUPNO95149 360 aaKnown RBP10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 LUC7L3O95232 432 aaKnown RBP10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 LDHCP07864 332 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 ALADP13716 330 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 NPEPPSP55786 919 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 DLG4P78352 724 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 NR1H3Q13133 447 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 PPP2R5EQ16537 467 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 C16orf86Q6ZW13 317 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 HS2ST1Q7LGA3 356 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 PPM1KQ8N3J5 372 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 FAM84AQ96KN4 292 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 RAB3IPQ96QF0 476 aaPredicted RBP10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 SETDB2Q96T68 719 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 TBC1D10AQ9BXI6 508 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 C12orf65Q9H3J6 166 aaKnown RBP10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 VRTNQ9H8Y1 702 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 IRAK4Q9NWZ3 460 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 TTC7AQ9ULT0 858 aaPredicted RBP10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 RABGAP1Q9Y3P9 1069 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 BCORQ6W2J9 1755 aa10.54□□□□□ -0.72
PTCHD4-202ENST00000398738 CACNA1SQ13698 1873 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 A0A1B0GVG6 124 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 ESYT2A0FGR8 921 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 SGPL1O95470 568 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 PTDSS1P48651 473 aaKnown RBP10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 GPC5P78333 572 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 MFSD14BQ5SR56 506 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 LLGL2Q6P1M3 1020 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 MIGA2Q7L4E1 593 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 GSTA5Q7RTV2 222 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 ERMNQ8TAM6 284 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 CNKSR1Q969H4 720 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 ZNF653Q96CK0 615 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 DDX50Q9BQ39 737 aaKnown RBP10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 NUP85Q9BW27 656 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 ANKRD2Q9GZV1 360 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 RNPEPL1Q9HAU8 725 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 AAASQ9NRG9 546 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 APEX2Q9UBZ4 518 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 ANAPC5Q9UJX4 755 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 MYO3BQ8WXR4 1341 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 MYH3P11055 1940 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 CYP26A1O43174 497 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 OAS1P00973 400 aaKnown RBP10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 TAC1P20366 129 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 CALB2P22676 271 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 PAPOLAP51003 745 aaKnown RBP10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 GSTO1P78417 241 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 FAM182AQ5T1J6 154 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 ARHGEF18Q6ZSZ5 1173 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 ARHGEF19Q8IW93 802 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 ART4Q93070 314 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 SPSB2Q99619 263 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 PHTF1Q9UMS5 762 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 C2CD2Q9Y426 696 aa10.53□□□□□ -0.72
PTCHD4-202ENST00000398738 GOLGA8IPA6NC78 632 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 GOLGA8JA6NMD2 632 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 DDX39AO00148 427 aaKnown RBP10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 EML1O00423 815 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 PEX11AO75192 247 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 SPATA31C1P0DKV0 1188 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 ARHGAP4P98171 946 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 QRICH1Q2TAL8 776 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 RFWD3Q6PCD5 774 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 ASRGL1Q7L266 308 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 ZC3H18Q86VM9 953 aaKnown RBP10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 SLC5A5Q92911 643 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 NPHS2Q9NP85 383 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 TXLNGQ9NUQ3 528 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 CHKBQ9Y259 395 aa10.52□□□□□ -0.72
PTCHD4-202ENST00000398738 GOLGA8RI6L899 631 aa10.52□□□□□ -0.73
PTCHD4-202ENST00000398738 GJB6O95452 261 aa10.52□□□□□ -0.73
PTCHD4-202ENST00000398738 IL9RQ01113 521 aa10.52□□□□□ -0.73
PTCHD4-202ENST00000398738 RCN2Q14257 317 aa10.52□□□□□ -0.73
PTCHD4-202ENST00000398738 ODR4Q5SWX8 454 aa10.52□□□□□ -0.73
PTCHD4-202ENST00000398738 BTNL9Q6UXG8 535 aa10.52□□□□□ -0.73
PTCHD4-202ENST00000398738 FAM178BQ8IXR5 827 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms