RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 MAPK4P31152 587 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 LLGL1Q15334 1064 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 STXBP2Q15833 593 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 TDRD10Q5VZ19 366 aaKnown RBP23.31■■□□□ 1.32
SHMT1-202ENST00000352886 SPOPLQ6IQ16 392 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 ASAP3Q8TDY4 903 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 CPA5Q8WXQ8 436 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 PABPC3Q9H361 631 aaKnown RBP23.31■■□□□ 1.32
SHMT1-202ENST00000352886 PCDHB2Q9Y5E7 798 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 MAFBQ9Y5Q3 323 aaPredicted RBP23.31■■□□□ 1.32
SHMT1-202ENST00000352886 SRCAPQ6ZRS2 3230 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 ZNF541Q9H0D2 1346 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 LRRIQ4A6NIV6 560 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 OATP04181 439 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 PIK3CAP42336 1068 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 FSTL1Q12841 308 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 MCOLN2Q8IZK6 566 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 HAPLN2Q9GZV7 340 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 KCNG1Q9UIX4 513 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 PTPRJQ12913 1337 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 MYPNQ86TC9 1320 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 C4BPAP04003 597 aaKnown RBP23.3■■□□□ 1.32
SHMT1-202ENST00000352886 SHBGP04278 402 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 SCP2P22307 547 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 KCNJ1P48048 391 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 MAGOHP61326 146 aaKnown RBP23.3■■□□□ 1.32
SHMT1-202ENST00000352886 PPP2R2AP63151 447 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 TRIM7Q9C029 511 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 FAM107BQ9H098 131 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 PORCNQ9H237 461 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 STYXL1Q9Y6J8 313 aa23.3■■□□□ 1.32
SHMT1-202ENST00000352886 LOC285556D6RIA3 1793 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 CLDN3O15551 220 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 GLRA2P23416 452 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 MAGEA9P43362 315 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 CNTN2Q02246 1040 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 PHLDB2Q86SQ0 1253 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 DEPTORQ8TB45 409 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 TRPM4Q8TD43 1214 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 ZBTB45Q96K62 511 aaPredicted RBP23.29■■□□□ 1.32
SHMT1-202ENST00000352886 PARP2Q9UGN5 583 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 SIP14410 1827 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 MROH7Q68CQ1 1323 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 NUDT17P0C025 328 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 RRM1P23921 792 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 GBP1P32455 592 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 CRELD2Q6UXH1 353 aaPredicted RBP23.29■■□□□ 1.32
SHMT1-202ENST00000352886 SEPT14Q6ZU15 432 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 NLRP14Q86W24 1093 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 PLCD3Q8N3E9 789 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 PLVAPQ9BX97 442 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 DHX33Q9H6R0 707 aaKnown RBP23.29■■□□□ 1.32
SHMT1-202ENST00000352886 PPANQ9NQ55 473 aaKnown RBP23.29■■□□□ 1.32
SHMT1-202ENST00000352886 MTRF1LQ9UGC7 380 aaKnown RBP23.29■■□□□ 1.32
SHMT1-202ENST00000352886 AFG3L2Q9Y4W6 797 aa23.29■■□□□ 1.32
SHMT1-202ENST00000352886 E7EVH7 732 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 K7ERI5 159 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 TMOD1P28289 359 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 NAMPTP43490 491 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 PRKG1Q13976 671 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 C2CD6Q53TS8 623 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 DENND2CQ68D51 928 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 ZNF677Q86XU0 584 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 MYCBPAPQ8TBZ2 947 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 ZNF473Q8WTR7 871 aaKnown RBP23.28■■□□□ 1.32
SHMT1-202ENST00000352886 RUNDC3BQ96NL0 473 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 CCT8L2Q96SF2 557 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 RBAKQ9NYW8 714 aaPredicted RBP23.28■■□□□ 1.32
SHMT1-202ENST00000352886 GGA3Q9NZ52 723 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 ANKFY1Q9P2R3 1169 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 ATG7O95352 703 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 VNN1O95497 513 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 FNTAP49354 379 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 B4GALNT4Q76KP1 1039 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 ANKRD35Q8N283 1001 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 C12orf50Q8NA57 414 aaPredicted RBP23.28■■□□□ 1.32
SHMT1-202ENST00000352886 SLC7A3Q8WY07 619 aa23.28■■□□□ 1.32
SHMT1-202ENST00000352886 RNF25Q96BH1 459 aaPredicted RBP23.28■■□□□ 1.32
SHMT1-202ENST00000352886 AVENQ9NQS1 362 aaPredicted RBP23.28■■□□□ 1.32
SHMT1-202ENST00000352886 WDR90Q96KV7 1748 aa23.27■■□□□ 1.32
SHMT1-202ENST00000352886 PASKQ96RG2 1323 aa23.27■■□□□ 1.32
SHMT1-202ENST00000352886 CAND2O75155 1236 aa23.27■■□□□ 1.32
SHMT1-202ENST00000352886 ICAM3P32942 547 aa23.27■■□□□ 1.32
SHMT1-202ENST00000352886 NSFP46459 744 aaKnown RBP23.27■■□□□ 1.32
SHMT1-202ENST00000352886 BPIFB4P59827 614 aa23.27■■□□□ 1.32
SHMT1-202ENST00000352886 ZBTB41Q5SVQ8 909 aa23.27■■□□□ 1.32
SHMT1-202ENST00000352886 LLGL2Q6P1M3 1020 aa23.27■■□□□ 1.32
SHMT1-202ENST00000352886 HOOK3Q86VS8 718 aa23.27■■□□□ 1.32
SHMT1-202ENST00000352886 DNERQ8NFT8 737 aa23.27■■□□□ 1.32
SHMT1-202ENST00000352886 TARS2Q9BW92 718 aaKnown RBP23.27■■□□□ 1.32
SHMT1-202ENST00000352886 LRRC19Q9H756 370 aa23.27■■□□□ 1.32
SHMT1-202ENST00000352886 LTBP3Q9NS15 1303 aa23.27■■□□□ 1.32
SHMT1-202ENST00000352886 PEX10O60683 326 aa23.27■■□□□ 1.31
SHMT1-202ENST00000352886 CYFIP2Q96F07 1278 aa23.27■■□□□ 1.31
SHMT1-202ENST00000352886 SSC5DA1L4H1 1573 aa23.26■■□□□ 1.31
SHMT1-202ENST00000352886 SRRM3A6NNA2 597 aaPredicted RBP23.26■■□□□ 1.31
SHMT1-202ENST00000352886 FSCN2O14926 492 aa23.26■■□□□ 1.31
SHMT1-202ENST00000352886 ECEL1O95672 775 aa23.26■■□□□ 1.31
SHMT1-202ENST00000352886 MYBL1P10243 752 aa23.26■■□□□ 1.31
SHMT1-202ENST00000352886 ARL2P36404 184 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms