RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SFXN1Q9H9B4 322 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 LIMD1Q9UGP4 676 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 SUN2Q9UH99 717 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 VPS28Q9UK41 221 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 TMCC1O94876 653 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 CLTAP09496 248 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 SMIM10L2AP0DMW4 78 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 SMIM10L2BP0DMW5 78 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 MAP4P27816 1152 aaKnown RBP8.94□□□□□ -0.98
HMGB1-203ENST00000341423 KRT20P35900 424 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 PER3P56645 1201 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 ZNF280AP59817 542 aaPredicted RBP8.94□□□□□ -0.98
HMGB1-203ENST00000341423 DNM1Q05193 864 aaKnown RBP8.94□□□□□ -0.98
HMGB1-203ENST00000341423 ZSCAN23Q3MJ62 389 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 RASEFQ8IZ41 740 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 ATP8B4Q8TF62 1192 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 POF1BQ8WVV4 589 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 PRCCQ92733 491 aaPredicted RBP8.94□□□□□ -0.98
HMGB1-203ENST00000341423 EAF2Q96CJ1 260 aaPredicted RBP8.94□□□□□ -0.98
HMGB1-203ENST00000341423 USP44Q9H0E7 712 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 ZSWIM6Q9HCJ5 1215 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 A0A1W2PQ45 241 aaPredicted RBP8.94□□□□□ -0.98
HMGB1-203ENST00000341423 A0A1W2PQY0 241 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 TIMP1P01033 207 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 FGFR2P21802 821 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 LSP1P33241 339 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 IFFO1Q0D2I5 559 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 FGL2Q14314 439 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 STILQ15468 1287 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 ALKBH2Q6NS38 261 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 MIB1Q86YT6 1006 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 SYTL1Q8IYJ3 562 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 PDZD8Q8NEN9 1154 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 FBXO44Q9H4M3 255 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 WDR35Q9P2L0 1181 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 SHISA7A6NL88 538 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 PRR5-ARHGAP8B1AHC4 643 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 MTA2O94776 668 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 GJB2P29033 226 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 LHX1P48742 406 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 ZBTB16Q05516 673 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 PRICKLE2Q7Z3G6 844 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 REPS2Q8NFH8 660 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 RHBDD1Q8TEB9 315 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 FOXJ1Q92949 421 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 LARP6Q9BRS8 491 aaKnown RBP8.94□□□□□ -0.98
HMGB1-203ENST00000341423 ECT2Q9H8V3 914 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 UMODL1Q5DID0 1318 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 FAM200BP0CF97 657 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 PTGER2P43116 358 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 TM4SF4P48230 202 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 EFHC2Q5JST6 749 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 C6orf118Q5T5N4 469 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 UNC45BQ8IWX7 931 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 TIPINQ9BVW5 301 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 RAB20Q9NX57 234 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 ANO9A1A5B4 782 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 C9J4A7 227 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 OPA1O60313 960 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 LGALS2P05162 132 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 GABRR2P28476 465 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 CCR3P51677 355 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 ZNF543Q08ER8 600 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 ACOT1Q86TX2 421 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 SLC7A14Q8TBB6 771 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 FUBP3Q96I24 572 aaKnown RBP eCLIP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 LXNQ9BS40 222 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 SUCOQ9UBS9 1254 aaKnown RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 TPRP12270 2363 aaKnown RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 DDTLA6NHG4 134 aaPredicted RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 BIN1O00499 593 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 CASP14P31944 242 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 CSTF2P33240 577 aaKnown RBP eCLIP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 NOVA1P51513 510 aaKnown RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 RBPJQ06330 500 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 SNAP47Q5SQN1 464 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 HLA-DQA1Q5Y7H0 255 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 ZNF746Q6NUN9 644 aaPredicted RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 EPAS1Q99814 870 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 ACE2Q9BYF1 805 aaPredicted RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 PCIF1Q9H4Z3 704 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.93□□□□□ -0.985e-9■■■■■ 39.6
HMGB1-203ENST00000341423 C6orf203Q9P0P8 240 aaPredicted RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 IGSF9Q9P2J2 1179 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 KCNJ14Q9UNX9 436 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 LOC102724159A0A0B4J2E5 919 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 SCP2P22307 547 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 ARHGAP8P85298 464 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 AP1B1Q10567 949 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 PWP2Q15269 919 aaKnown RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 LY6KQ17RY6 165 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 ZNF513Q8N8E2 541 aaPredicted RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 CXorf40AQ8TE69 158 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 MAML3Q96JK9 1138 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 TXLNGQ9NUQ3 528 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 DDX19AQ9NUU7 478 aaKnown RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 DDX56Q9NY93 547 aaKnown RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 GCC2Q8IWJ2 1684 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 BCORL1Q5H9F3 1711 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 PPFIA2O75334 1257 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms