RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 CALML6Q8TD86 181 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 CEP19Q96LK0 163 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 RIT2Q99578 217 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 RIMS1Q86UR5 1692 aaKnown RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 RPA1P27694 616 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 MTF1Q14872 753 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 OR6B2Q6IFH4 312 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 LRRC31Q6UY01 552 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 RASSF3Q86WH2 238 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 DCPSQ96C86 337 aaKnown RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 FAM192AQ9GZU8 254 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 TRPC5Q9UL62 973 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 SALL3Q9BXA9 1300 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 DEAF1O75398 565 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 RARGP13631 454 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 CCDC92Q53HC0 331 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 RAD9BQ6WBX8 426 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 SRBD1Q8N5C6 995 aaKnown RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 JPH1Q9HDC5 661 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 PPME1Q9Y570 386 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 PCDHA10Q9Y5I2 948 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 RFC5P40937 340 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 ZNF543Q08ER8 600 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 AP4S1Q9Y587 144 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 HSD17B3P37058 310 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 IREB2P48200 963 aaKnown RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 ZNF200P98182 395 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 SPICE1Q8N0Z3 855 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 RBAKQ9NYW8 714 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 MPP6Q9NZW5 540 aa10.84□□□□□ -0.67
CCDC88A-202ENST00000336838 GALCP54803 685 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 GTF3C2Q8WUA4 911 aaPredicted RBP10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 CHP1Q99653 195 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 NEU2Q9Y3R4 380 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 CYP2D7A0A087X1C5 515 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 TMEM120BA0PK00 339 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 APOA1P02647 267 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 SLC16A2P36021 539 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 GEMIN4P57678 1058 aaKnown RBP10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 DIXDC1Q155Q3 683 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 FRA10AC1Q70Z53 315 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 ZNF518BQ9C0D4 1074 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 HPS5Q9UPZ3 1129 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 UBR1Q8IWV7 1749 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 NEK2P51955 445 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 HSPH1Q92598 858 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 CCDC126Q96EE4 140 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 SLC8A2Q9UPR5 921 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 A8MXQ7 604 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 FCER1AP12319 257 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 SF3B3Q15393 1217 aaKnown RBP10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 HAUS6Q7Z4H7 955 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 PPIL6Q8IXY8 311 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 ZNF302Q9NR11 478 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 MTMR4Q9NYA4 1195 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 NXF1Q9UBU9 619 aaKnown RBP10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 H0Y626 953 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 SNX2O60749 519 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 TRIM16O95361 564 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 CTDNEP1O95476 244 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 LSM8O95777 96 aaKnown RBP10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 PDHA1P08559 390 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 TRMT5Q32P41 509 aaKnown RBP10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 DTX3LQ8TDB6 740 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 JADE3Q92613 823 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 CENPTQ96BT3 561 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 SCHIP1Q9P0W5 487 aaPredicted RBP10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 TCP10L2B9ZVM9 353 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 PIGOQ8TEQ8 1089 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 NSL1Q96IY1 281 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 ABCF3Q9NUQ8 709 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 HSPBP1Q9NZL4 362 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 ANKRD12Q6UB98 2062 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 RAD51CO43502 376 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 YWHABP31946 246 aaKnown RBP10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 STIP1P31948 543 aaKnown RBP10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 ARHGEF6Q15052 776 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 SGSM1Q2NKQ1 1148 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 LINC00523Q86TU6 105 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 CLEC11AQ9Y240 323 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 FAM237AA0A1B0GTK4 181 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 ARHGEF9O43307 516 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 NCK2O43639 380 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 MCL1Q07820 350 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 RGS9BPQ6ZS82 235 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 NCAPG2Q86XI2 1143 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 GSPT2Q8IYD1 628 aaKnown RBP10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 DYDC2Q96IM9 177 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 ZIM3Q96PE6 472 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 RXFP1Q9HBX9 757 aa10.83□□□□□ -0.68
CCDC88A-202ENST00000336838 H0Y3Z8 333 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 QRICH1Q2TAL8 776 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 CYB5D1Q6P9G0 228 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 THEM5Q8N1Q8 247 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 C18orf8Q96DM3 657 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 MED15Q96RN5 788 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 C10orf88Q9H8K7 445 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 PLEKHA5Q9HAU0 1116 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 SLC24A2Q9UI40 661 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 AGO2Q9UKV8 859 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms