RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SNX27Q96L92 541 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 NT5C1BQ96P26 610 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 ACAP3Q96P50 834 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 SPAG5Q96R06 1193 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 GPR88Q9GZN0 384 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 NLRC4Q9NPP4 1024 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 DNAJC12Q9UKB3 198 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 AJAP1Q9UKB5 411 aaPredicted RBP16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 BZW2Q9Y6E2 419 aaKnown RBP16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 SOWAHDA6NJG2 315 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 CCP110O43303 1012 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 NPTXRO95502 500 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 ASS1P00966 412 aaKnown RBP16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 CD4P01730 458 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 SERPING1P05155 500 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 FERP16591 822 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 STAT1P42224 750 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 NCOA4Q13772 614 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 ASTE1Q2TB18 679 aaPredicted RBP16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 ALKAL1Q6UXT8 129 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 TRAPPC11Q7Z392 1133 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 ANKLE1Q8NAG6 615 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 SHC3Q92529 594 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 TAF4BQ92750 862 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 CHP1Q99653 195 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 EIF2AQ9BY44 585 aaKnown RBP16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 TRPV6Q9H1D0 765 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 VRTNQ9H8Y1 702 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 CNTN3Q9P232 1028 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 ARHGAP20Q9P2F6 1191 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 ST3GAL5Q9UNP4 418 aa16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.1■□□□□ 0.17
CCDC88C-202ENST00000334448 LACTBL1A8MY62 500 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 EIF3CLB5ME19 914 aaKnown RBP16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 GFPT2O94808 682 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 LCA5LO95447 670 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 SGPL1O95470 568 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 STAU1O95793 577 aaKnown RBP16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 TNNC2P02585 160 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 CTSHP09668 335 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 COL6A1P12109 1028 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 CKBP12277 381 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 SOX5P35711 763 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 RAPGEF1Q13905 1077 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 DSC3Q14574 896 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 LPIN1Q14693 890 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 DRAP1Q14919 205 aaPredicted RBP16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 LMBRD2Q68DH5 695 aaPredicted RBP16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 ANKRD33Q7Z3H0 272 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 IRF2BP2Q7Z5L9 587 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 ARHGEF19Q8IW93 802 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 CCAR2Q8N163 923 aaKnown RBP16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 CXorf38Q8TB03 319 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 ANKRD36BP1Q96IX9 119 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 EIF3CQ99613 913 aaKnown RBP16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 MTMR12Q9C0I1 747 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 ADGRG1Q9Y653 693 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 CENPFP49454 3210 aa16.09■□□□□ 0.17
CCDC88C-202ENST00000334448 RALGAPA2Q2PPJ7 1873 aa16.08■□□□□ 0.17
CCDC88C-202ENST00000334448 PITPNM1O00562 1244 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 ZSCAN12O43309 604 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 ZNF623O75123 536 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 NDUFA10O95299 355 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 NFICP08651 508 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 TMEM191BP0C7N4 346 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 CCDC172P0C7W6 258 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 KCNE1P15382 129 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 CYLC1P35663 651 aaPredicted RBP16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 PIK3CAP42336 1068 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 RAB27AP51159 221 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 YARSP54577 528 aaKnown RBP16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 MFAP3P55082 362 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 BIRC3Q13489 604 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 ZBTB6Q15916 424 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 ASIC2Q16515 512 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 ZNF618Q5T7W0 954 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 GJB7Q6PEY0 223 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 ZNF662Q6ZS27 426 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 FAM71AQ8IYT1 594 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 SMG8Q8ND04 991 aaKnown RBP16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 U2AF1L4Q8WU68 220 aaKnown RBP16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 KREMEN1Q96MU8 473 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 TOX2Q96NM4 488 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 SYT11Q9BT88 431 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 TRIM6Q9C030 488 aaPredicted RBP16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 NXF3Q9H4D5 531 aaKnown RBP16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 FAM124BQ9H5Z6 455 aaPredicted RBP16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 AGO3Q9H9G7 860 aaKnown RBP16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 NHEJ1Q9H9Q4 299 aaPredicted RBP16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 UBE2TQ9NPD8 197 aaPredicted RBP16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 C1orf112Q9NSG2 853 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 ITGA11Q9UKX5 1188 aa16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 EPN1Q9Y6I3 576 aaPredicted RBP16.08■□□□□ 0.16
CCDC88C-202ENST00000334448 GOLGA6L9A6NEM1 432 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 RBAK-RBAKDNI3L0D1 243 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 LRRN2O75325 713 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 RECQL4O94761 1208 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 CCDC175P0C221 793 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 TBXAS1P24557 533 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 ATICP31939 592 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms