RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 COLEC11Q9BWP8 271 aa17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 KCTD10Q9H3F6 313 aa17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 TLR9Q9NR96 1032 aa17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 MARCH5Q9NX47 278 aa17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 CGNQ9P2M7 1197 aaKnown RBP17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 LZTS1Q9Y250 596 aa17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 CAMK1Q14012 370 aa17.27■□□□□ 0.36
CCDC28A-201ENST00000332797 CCDC85BQ15834 202 aaPredicted RBP17.27■□□□□ 0.36
CCDC28A-201ENST00000332797 ZNF658Q5TYW1 1059 aaPredicted RBP17.27■□□□□ 0.36
CCDC28A-201ENST00000332797 ISM2Q6H9L7 571 aa17.27■□□□□ 0.36
CCDC28A-201ENST00000332797 JADE1Q6IE81 842 aa17.27■□□□□ 0.36
CCDC28A-201ENST00000332797 BRSK2Q8IWQ3 736 aa17.27■□□□□ 0.36
CCDC28A-201ENST00000332797 CD302Q8IX05 232 aa17.27■□□□□ 0.36
CCDC28A-201ENST00000332797 PPM1EQ8WY54 764 aa17.27■□□□□ 0.36
CCDC28A-201ENST00000332797 ENTPD7Q9NQZ7 604 aa17.27■□□□□ 0.36
CCDC28A-201ENST00000332797 RBAKQ9NYW8 714 aaPredicted RBP17.27■□□□□ 0.36
CCDC28A-201ENST00000332797 TUBGCP4Q9UGJ1 667 aa17.27■□□□□ 0.36
CCDC28A-201ENST00000332797 MAN1B1Q9UKM7 699 aa17.27■□□□□ 0.36
CCDC28A-201ENST00000332797 ATG2AQ2TAZ0 1938 aa17.27■□□□□ 0.35
CCDC28A-201ENST00000332797 KIF4AO95239 1232 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 IL18RAPO95256 599 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 ADRB2P07550 413 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 IRS1P35568 1242 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 CLCNKBP51801 687 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 ERVFC1P60507 584 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 TIGD5Q53EQ6 642 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 DDX53Q86TM3 631 aaKnown RBP17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 GUF1Q8N442 669 aaKnown RBP17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 MAFAQ8NHW3 353 aaPredicted RBP17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 MICAL1Q8TDZ2 1067 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 HASPINQ8TF76 798 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 UROC1Q96N76 676 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 VN1R3Q9BXE9 311 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 CLSTN2Q9H4D0 955 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 ADAM28Q9UKQ2 775 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 PCDHGC5Q9Y5F6 944 aa17.26■□□□□ 0.35
CCDC28A-201ENST00000332797 BIN1O00499 593 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 PDXKO00764 312 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 TADA2AO75478 443 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 NFICP08651 508 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 CA8P35219 290 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 POU5F1Q01860 360 aaKnown RBP17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 TMEM132DQ14C87 1099 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 PLPP4Q5VZY2 271 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 TMC7Q7Z402 723 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 CBWD2Q8IUF1 395 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 VPS52Q8N1B4 723 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 TMEM130Q8N3G9 435 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 XXYLT1Q8NBI6 393 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 TCF25Q9BQ70 676 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 ASB7Q9H672 318 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 UBQLN1Q9UMX0 589 aaKnown RBP17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 ANK1P16157 1881 aa17.25■□□□□ 0.35
CCDC28A-201ENST00000332797 ZNF233A6NK53 670 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 PODXLO00592 558 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 XPOTO43592 962 aaKnown RBP17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 CALUO43852 315 aaPredicted RBP17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 EXOC3O60645 756 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 PRCPP42785 496 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 GUCY2FP51841 1108 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 WNT7BP56706 349 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 SNRNP35Q16560 246 aaKnown RBP17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 UPP1Q16831 310 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 C12orf56Q8IXR9 622 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 RDH13Q8NBN7 331 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 GPT2Q8TD30 523 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 TSPAN18Q96SJ8 248 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 GTPBP4Q9BZE4 634 aaKnown RBP17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 NSUN3Q9H649 340 aaKnown RBP17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 KIAA1586Q9HCI6 787 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 DERAQ9Y315 318 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 FSCN2O14926 492 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 B3GAT3O94766 335 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 NR3C1P04150 777 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 CYP3A5P20815 502 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 ZBTB6Q15916 424 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 TCEAL5Q5H9L2 206 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 FUT10Q6P4F1 479 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 DCLRE1AQ6PJP8 1040 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 EFCAB13Q8IY85 973 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 BEST2Q8NFU1 509 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 DDX27Q96GQ7 796 aaKnown RBP17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 FBXL18Q96ME1 805 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 HERC2P3Q9BVR0 1158 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 ZBP1Q9H171 429 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 NUP62CLQ9H1M0 184 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 KIAA1468Q9P260 1216 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 STK39Q9UEW8 545 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 C2CD2Q9Y426 696 aa17.24■□□□□ 0.35
CCDC28A-201ENST00000332797 SF3B1O75533 1304 aaKnown RBP eCLIP17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 PRRC2BQ5JSZ5 2229 aaKnown RBP17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 REV3LO60673 3130 aa17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 SOD2P04179 222 aa17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 RPL9P32969 192 aaKnown RBP17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 MORC3Q14149 939 aa17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 SMC1AQ14683 1233 aaKnown RBP17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 COBLL1Q53SF7 1204 aa17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 SPATA1Q5VX52 437 aa17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 PDE12Q6L8Q7 609 aaKnown RBP17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 TAS1R1Q7RTX1 841 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms