RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MTRF1O75570 445 aaKnown RBP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 TNFAIP8O95379 198 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 TIPINQ9BVW5 301 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 NSUN2Q08J23 767 aaKnown RBP eCLIP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 SPANXN2Q5MJ10 180 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 FGD2Q7Z6J4 655 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 MMADHCQ9H3L0 296 aaPredicted RBP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 SLC40A1Q9NP59 571 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 UBAP1LF5GYI3 381 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 TTC23LQ6PF05 361 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 MIGA2Q7L4E1 593 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 EEF2KMTQ96G04 330 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 THTPAQ9BU02 230 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 PCCAP05165 728 aaPredicted RBP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 HMOX2P30519 316 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 XPO6Q96QU8 1125 aaKnown RBP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 SLC13A1Q9BZW2 595 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 ALDH8A1Q9H2A2 487 aaPredicted RBP14.99□□□□□ -0.01
COL7A1-201ENST00000328333 NMRK1Q9NWW6 199 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 RTN2O75298 545 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 FAM45AQ8TCE6 357 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 EGFL8Q99944 293 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 AATKQ6ZMQ8 1374 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 ERAP1Q9NZ08 941 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 CTNNAL1Q9UBT7 734 aa14.99□□□□□ -0.01
COL7A1-201ENST00000328333 GUCA1CO95843 209 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 ALAS1P13196 640 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 HSD17B4P51659 736 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 GYS2P54840 703 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 TSPY1Q01534 308 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 KCNH2Q12809 1159 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 POP5Q969H6 163 aaKnown RBP14.98□□□□□ -0.01
COL7A1-201ENST00000328333 XDHP47989 1333 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 DNALI1O14645 258 aaPredicted RBP14.98□□□□□ -0.01
COL7A1-201ENST00000328333 HPCAP84074 193 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 NGRNQ9NPE2 291 aaKnown RBP14.98□□□□□ -0.01
COL7A1-201ENST00000328333 SLC4A1P02730 911 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 HADHAP40939 763 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 SUGP1Q8IWZ8 645 aaKnown RBP14.98□□□□□ -0.01
COL7A1-201ENST00000328333 FAM162AQ96A26 154 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 MCRS1Q96EZ8 462 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 G3BP2Q9UN86 482 aaKnown RBP14.98□□□□□ -0.01
COL7A1-201ENST00000328333 KLHL20Q9Y2M5 609 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 ABCB1P08183 1280 aaPredicted RBP14.98□□□□□ -0.01
COL7A1-201ENST00000328333 IL12RB1P42701 662 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 PLA2G4AP47712 749 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 KRT76Q01546 638 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 POU5F1BQ06416 359 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 KCTD2Q14681 263 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 PDCD6IPQ8WUM4 868 aaKnown RBP14.98□□□□□ -0.01
COL7A1-201ENST00000328333 SEPT1Q8WYJ6 367 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 HPS3Q969F9 1004 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 ZC3H7BQ9UGR2 993 aaKnown RBP14.98□□□□□ -0.01
COL7A1-201ENST00000328333 HEY1Q9Y5J3 304 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 SRGAP2O75044 1071 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 SEC24DO94855 1032 aaPredicted RBP14.98□□□□□ -0.01
COL7A1-201ENST00000328333 NCAPHQ15003 741 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 KCTD17Q8N5Z5 321 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 ATP8B4Q8TF62 1192 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 SYN2Q92777 582 aaPredicted RBP14.98□□□□□ -0.01
COL7A1-201ENST00000328333 EAF2Q96CJ1 260 aaPredicted RBP14.98□□□□□ -0.01
COL7A1-201ENST00000328333 C1orf228Q6PIY5 440 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 DIS3LQ8TF46 1054 aaKnown RBP14.98□□□□□ -0.01
COL7A1-201ENST00000328333 HMG20AQ9NP66 347 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 PLEKHG3A1L390 1219 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 BIRC5O15392 142 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 IL6P05231 212 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 OMA1Q96E52 524 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 MAGEB18Q96M61 343 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 ITM2BQ9Y287 266 aa14.98□□□□□ -0.01
COL7A1-201ENST00000328333 FKBP6O75344 327 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 USP1O94782 785 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 GCP02774 474 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 ZNF200P98182 395 aaPredicted RBP14.97□□□□□ -0.01
COL7A1-201ENST00000328333 PIGHQ14442 188 aaPredicted RBP14.97□□□□□ -0.01
COL7A1-201ENST00000328333 SLC18A3Q16572 532 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 IYDQ6PHW0 289 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 CCDC149Q6ZUS6 474 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 LARGE2Q8N3Y3 721 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 C20orf96Q9NUD7 363 aaPredicted RBP14.97□□□□□ -0.01
COL7A1-201ENST00000328333 WDR35Q9P2L0 1181 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 NBPF26B4DH59 902 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 SNAP25P60880 206 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 NBPF15Q8N660 670 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 TMA16Q96EY4 203 aaKnown RBP14.97□□□□□ -0.01
COL7A1-201ENST00000328333 PI4K2BG5E9Z4 385 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 PDE8BO95263 885 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 DDX50Q9BQ39 737 aaKnown RBP14.97□□□□□ -0.01
COL7A1-201ENST00000328333 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.97□□□□□ -0.01
COL7A1-201ENST00000328333 ARHGEF26Q96DR7 871 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 MANSC1Q9H8J5 431 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 PREX2Q70Z35 1606 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 EVPLLA8MZ36 301 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 KNOP1Q1ED39 458 aaKnown RBP14.97□□□□□ -0.01
COL7A1-201ENST00000328333 PRMT9Q6P2P2 845 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 CYFIP1Q7L576 1253 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 LRRC47Q8N1G4 583 aaKnown RBP14.97□□□□□ -0.01
COL7A1-201ENST00000328333 MTERF3Q96E29 417 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 CEP44Q9C0F1 390 aa14.97□□□□□ -0.01
COL7A1-201ENST00000328333 SMIM31A0A1B0GVY4 71 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms