RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZNF280AP59817 542 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-201ENST00000326004 NKX6-1P78426 367 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-201ENST00000326004 SNAPC2Q13487 334 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 GRM3Q14832 879 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 ANO6Q4KMQ2 910 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 PABPC1LQ4VXU2 614 aaKnown RBP4.27□□□□□ -1.73
HMGB1-201ENST00000326004 MAMDC4Q6UXC1 1216 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 CHST15Q7LFX5 561 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-201ENST00000326004 HEATR3Q7Z4Q2 680 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 DAAM2Q86T65 1068 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 NLGN4YQ8NFZ3 816 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-201ENST00000326004 OR52N2Q8NGI0 321 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 PPP1R35Q8TAP8 253 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 SLC35B2Q8TB61 432 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 KLHDC4Q8TBB5 520 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 TFAP2CQ92754 450 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 TTC17Q96AE7 1141 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 VRK1Q99986 396 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-201ENST00000326004 PNPOQ9NVS9 261 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 RUVBL1Q9Y265 456 aaKnown RBP4.27□□□□□ -1.73
HMGB1-201ENST00000326004 PCDHA3Q9Y5H8 950 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 LRRC14BA6NHZ5 514 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 K7ESM1 405 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 WNT10BO00744 389 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 ZBED1O96006 694 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 POMCP01189 267 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 KRT18P05783 430 aaKnown RBP4.26□□□□□ -1.73
HMGB1-201ENST00000326004 CD1AP06126 327 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 TYRP14679 529 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 CTSWP56202 376 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 GPSM2P81274 684 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 ICAM4Q14773 271 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 ATXN7L2Q5T6C5 722 aaPredicted RBP4.26□□□□□ -1.73
HMGB1-201ENST00000326004 ANKS6Q68DC2 871 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 NAIF1Q69YI7 327 aaPredicted RBP4.26□□□□□ -1.73
HMGB1-201ENST00000326004 EFCAB12Q6NXP0 572 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 HTR3DQ70Z44 454 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 SGMS1Q86VZ5 419 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 XYLT1Q86Y38 959 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 GSPT2Q8IYD1 628 aaKnown RBP4.26□□□□□ -1.73
HMGB1-201ENST00000326004 ELOA2Q8IYF1 753 aaPredicted RBP4.26□□□□□ -1.73
HMGB1-201ENST00000326004 KIAA0319LQ8IZA0 1049 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 FAM43AQ8N2R8 423 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 DCBLD1Q8N8Z6 715 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 IL17RDQ8NFM7 739 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 EDAQ92838 391 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 C20orf173Q96LM9 149 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 LRFN3Q9BTN0 628 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 NDC1Q9BTX1 674 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 CD248Q9HCU0 757 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 ABCF2Q9UG63 623 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 DDX20Q9UHI6 824 aaKnown RBP4.26□□□□□ -1.73
HMGB1-201ENST00000326004 SLC23A1Q9UHI7 598 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 JAG2Q9Y219 1238 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 TCAF1Q9Y4C2 921 aa4.26□□□□□ -1.73
HMGB1-201ENST00000326004 CAPN8A6NHC0 703 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 GOLGA6L6A8MZA4 724 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 NT5C1B-RDH14C9J2C7 533 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 H3BUI4 141 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 F2RL2O00254 374 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 TPP1O14773 563 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 GRM6O15303 877 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 ACO1P21399 889 aaKnown RBP4.25□□□□□ -1.73
HMGB1-201ENST00000326004 PRDX5P30044 214 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 SELENOPP49908 381 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 CACNB3P54284 484 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 USP14P54578 494 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 RAP2BP61225 183 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 RAB1AP62820 205 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 PURAQ00577 322 aaKnown RBP4.25□□□□□ -1.73
HMGB1-201ENST00000326004 PLP2Q04941 152 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 FGL2Q14314 439 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 PLS1Q14651 629 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 VPS72Q15906 364 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 FLYWCH1Q4VC44 716 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 ZNF529Q6P280 563 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 NPNTQ6UXI9 565 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 Q6ZSN1 163 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 FAM90A1Q86YD7 464 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 ZNF808Q8N4W9 903 aaPredicted RBP4.25□□□□□ -1.73
HMGB1-201ENST00000326004 MB21D1Q8N884 522 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 CHST13Q8NET6 341 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 BRIX1Q8TDN6 353 aaKnown RBP4.25□□□□□ -1.73
HMGB1-201ENST00000326004 ATXN2LQ8WWM7 1075 aaKnown RBP4.25□□□□□ -1.73
HMGB1-201ENST00000326004 SLC35A4Q96G79 324 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 LOXL4Q96JB6 756 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 MYOCQ99972 504 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 PACSIN1Q9BY11 444 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 B3GNT5Q9BYG0 378 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 SPON1Q9HCB6 807 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 SARS2Q9NP81 518 aaKnown RBP4.25□□□□□ -1.73
HMGB1-201ENST00000326004 CNNM1Q9NRU3 951 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 RLIMQ9NVW2 624 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 L1RE1Q9UN81 338 aa4.25□□□□□ -1.73
HMGB1-201ENST00000326004 PNPLA7Q6ZV29 1317 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 KIAA0391O15091 583 aaKnown RBP4.24□□□□□ -1.73
HMGB1-201ENST00000326004 SLC43A1O75387 559 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 HAUS5O94927 633 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 ANXA1P04083 346 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 MYL1P05976 194 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms