RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 ATG4AQ8WYN0 398 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 SH3GL2Q99962 352 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 TRIM4Q9C037 500 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 WHRNQ9P202 907 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 CLGNO14967 610 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 ARP10275 920 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 CYP11B1P15538 503 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 PSMC1P62191 440 aaKnown RBP15.61■□□□□ 0.09
TCOF1-201ENST00000323668 MAPK6Q16659 721 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 ANKMY2Q8IV38 441 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 RIBC1Q8N443 379 aaPredicted RBP15.61■□□□□ 0.09
TCOF1-201ENST00000323668 PPM1NQ8N819 430 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 PGM2Q96G03 612 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 PI4K2AQ9BTU6 479 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 KLC2Q9H0B6 622 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 RPF1Q9H9Y2 349 aaKnown RBP15.61■□□□□ 0.09
TCOF1-201ENST00000323668 RBAK-RBAKDNI3L0D1 243 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 AGPSO00116 658 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 LPXNO60711 386 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 MYCNP04198 464 aaPredicted RBP15.61■□□□□ 0.09
TCOF1-201ENST00000323668 GEN1Q17RS7 908 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 PDZD4Q76G19 769 aaPredicted RBP15.61■□□□□ 0.09
TCOF1-201ENST00000323668 IRF2BP2Q7Z5L9 587 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 RHPN2Q8IUC4 686 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 CBWD2Q8IUF1 395 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 GABPB2Q8TAK5 448 aaPredicted RBP15.61■□□□□ 0.09
TCOF1-201ENST00000323668 SCFD2Q8WU76 684 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 KCNMB3Q9NPA1 279 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 DDX4Q9NQI0 724 aaKnown RBP15.61■□□□□ 0.09
TCOF1-201ENST00000323668 TPX2Q9ULW0 747 aaKnown RBP15.61■□□□□ 0.09
TCOF1-201ENST00000323668 TTLL3Q9Y4R7 772 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 NALCNQ8IZF0 1738 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 KIAA0391O15091 583 aaKnown RBP15.61■□□□□ 0.09
TCOF1-201ENST00000323668 TLR2O60603 784 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 TAP1Q03518 808 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 KCNA1Q09470 495 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 CDO1Q16878 200 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 SNRNP48Q6IEG0 339 aaKnown RBP15.61■□□□□ 0.09
TCOF1-201ENST00000323668 WDR75Q8IWA0 830 aaKnown RBP15.61■□□□□ 0.09
TCOF1-201ENST00000323668 ZDHHC15Q96MV8 337 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 SPEF2Q9C093 1822 aa15.61■□□□□ 0.09
TCOF1-201ENST00000323668 TOPAZ1Q8N9V7 1692 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 PDHA1P08559 390 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 GHRP10912 638 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 SLC12A2P55011 1212 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 ZNF677Q86XU0 584 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 RTKN2Q8IZC4 609 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 ZHX2Q9Y6X8 837 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 ASAP2O43150 1006 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 SH3BGRP55822 239 aaPredicted RBP15.6■□□□□ 0.09
TCOF1-201ENST00000323668 EEPD1Q7L9B9 569 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 CNPY4Q8N129 248 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 KCTD10Q9H3F6 313 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 PPCSQ9HAB8 311 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 ASNSD1Q9NWL6 643 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 SALL4Q9UJQ4 1053 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 GGA2Q9UJY4 613 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 CSADQ9Y600 493 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 SLITRK3O94933 977 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 HLA-DRAP01903 254 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 SPP2Q13103 211 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 MAP7Q14244 749 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 TRADDQ15628 312 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 NXNQ6DKJ4 435 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 SLC30A10Q6XR72 485 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 ZC3H18Q86VM9 953 aaKnown RBP15.6■□□□□ 0.09
TCOF1-201ENST00000323668 RBBP8NLQ8NC74 664 aaPredicted RBP15.6■□□□□ 0.09
TCOF1-201ENST00000323668 FAM149B1Q96BN6 582 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 NLRP4Q96MN2 994 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 Q9H521 79 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 DDTLA6NHG4 134 aaPredicted RBP15.6■□□□□ 0.09
TCOF1-201ENST00000323668 IFI35P80217 286 aaPredicted RBP15.6■□□□□ 0.09
TCOF1-201ENST00000323668 PSMD6Q15008 389 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 STXBP2Q15833 593 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 UBXN6Q9BZV1 441 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 SLC24A3Q9HC58 644 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 PSMC3IPQ9P2W1 217 aaPredicted RBP15.6■□□□□ 0.09
TCOF1-201ENST00000323668 TBX20Q9UMR3 447 aa15.6■□□□□ 0.09
TCOF1-201ENST00000323668 LRRC37A3O60309 1634 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 SPECC1L-ADORA2AF8WAN1 911 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 GOLGA8RI6L899 631 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 CAPN9O14815 690 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 SHOX2O60902 331 aaPredicted RBP15.59■□□□□ 0.09
TCOF1-201ENST00000323668 FDX1P10109 184 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 NQO1P15559 274 aaKnown RBP15.59■□□□□ 0.09
TCOF1-201ENST00000323668 RPL21P46778 160 aaKnown RBP15.59■□□□□ 0.09
TCOF1-201ENST00000323668 DNAJC3Q13217 504 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 ARHGEF26Q96DR7 871 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 CYTH2Q99418 400 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 YY1AP1Q9H869 796 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 ANKEF1Q9NU02 776 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 IVNS1ABPQ9Y6Y0 642 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 MED1Q15648 1581 aaPredicted RBP15.59■□□□□ 0.09
TCOF1-201ENST00000323668 LMO7Q8WWI1 1683 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 HNRNPCL1O60812 293 aaKnown RBP15.59■□□□□ 0.09
TCOF1-201ENST00000323668 DUOXA2Q1HG44 320 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 SPDYCQ5MJ68 293 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 TTLL6Q8N841 843 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 NSMCE1Q8WV22 266 aa15.59■□□□□ 0.09
TCOF1-201ENST00000323668 TSC22D3Q99576 134 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms