RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 DRC3Q9H069 523 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 ADA2Q9NZK5 511 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 FAN1Q9Y2M0 1017 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 EIF3CLB5ME19 914 aaKnown RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 GTF2H1P32780 548 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 MFN1Q8IWA4 741 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 NUP93Q8N1F7 819 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 EIF3CQ99613 913 aaKnown RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 MIR1-1HGQ9H1L0 117 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 SMARCAL1Q9NZC9 954 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.24□□□□□ -1.09
SCN9A-201ENST00000303354 PCDHAC2Q9Y5I4 1007 aa8.24□□□□□ -1.09
SCN9A-201ENST00000303354 GHRP10912 638 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 SCP2P22307 547 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 ATG16L1Q676U5 607 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 ATG9AQ7Z3C6 839 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 FAM151AQ8WW52 585 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 ZNF560Q96MR9 790 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 GPR63Q9BZJ6 419 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 PTPRHQ9HD43 1115 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 CHST12Q9NRB3 414 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 PKP3Q9Y446 797 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 ARIH2O95376 493 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 PDGFRAP16234 1089 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 HARS2P49590 506 aaKnown RBP8.23□□□□□ -1.09
SCN9A-201ENST00000303354 CATSPER3Q86XQ3 398 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 MIER2Q8N344 545 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 STKLD1Q8NE28 680 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 TDRD7Q8NHU6 1098 aaKnown RBP8.23□□□□□ -1.09
SCN9A-201ENST00000303354 FAM20AQ96MK3 541 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 TARS2Q9BW92 718 aaKnown RBP8.23□□□□□ -1.09
SCN9A-201ENST00000303354 PPARGC1AQ9UBK2 798 aaKnown RBP8.23□□□□□ -1.09
SCN9A-201ENST00000303354 TRAF3IP3Q9Y228 551 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 C19orf81C9J6K1 198 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 RPS6P62753 249 aaKnown RBP8.23□□□□□ -1.09
SCN9A-201ENST00000303354 TUBB2AQ13885 445 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 GBP5Q96PP8 586 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 TUBB2BQ9BVA1 445 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 SNTG2Q9NY99 539 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 IQANK1A0A1B0GTG1 560 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 NCOA4Q13772 614 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 CCHCR1Q8TD31 782 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 DDI1Q8WTU0 396 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 TNIP3Q96KP6 325 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 KIF17Q9P2E2 1029 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 VEGFAP15692 232 aaPredicted RBP8.23□□□□□ -1.09
SCN9A-201ENST00000303354 CHRM3P20309 590 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 PEX19P40855 299 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 KCNB1Q14721 858 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 CEP55Q53EZ4 464 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 KRT39Q6A163 491 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 TXNRD3Q86VQ6 643 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 IL1RL2Q9HB29 575 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 MKL2Q9ULH7 1088 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 GYS1P13807 737 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 CDH18Q13634 790 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 SHCBP1Q8NEM2 672 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 RSPH1Q8WYR4 309 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 CDCA5Q96FF9 252 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 VPS39Q96JC1 886 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 MYOCQ99972 504 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 VGLL3A8MV65 326 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 CTNND1O60716 968 aaKnown RBP8.23□□□□□ -1.09
SCN9A-201ENST00000303354 SERPINI2O75830 405 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 ASS1P00966 412 aaKnown RBP8.23□□□□□ -1.09
SCN9A-201ENST00000303354 DAB2P98082 770 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 NCAPHQ15003 741 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 RGS9BPQ6ZS82 235 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 BZW1Q7L1Q6 419 aaKnown RBP8.23□□□□□ -1.09
SCN9A-201ENST00000303354 PDIK1LQ8N165 341 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 LATS2Q9NRM7 1088 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 IP6K2Q9UHH9 426 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 ACAT1P24752 427 aaKnown RBP8.23□□□□□ -1.09
SCN9A-201ENST00000303354 NNTQ13423 1086 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 PLCL1Q15111 1095 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 DOK6Q6PKX4 331 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 ACOT1Q86TX2 421 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 SRRM1Q8IYB3 904 aaKnown RBP8.23□□□□□ -1.09
SCN9A-201ENST00000303354 TRAIPQ9BWF2 469 aa8.23□□□□□ -1.09
SCN9A-201ENST00000303354 DDX47Q9H0S4 455 aaKnown RBP8.23□□□□□ -1.09
SCN9A-201ENST00000303354 SPATA31A5Q5VU36 1347 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 SPATA31A7Q8IWB4 1347 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 NPM3O75607 178 aaKnown RBP8.22□□□□□ -1.09
SCN9A-201ENST00000303354 CKMP06732 381 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 GFAPP14136 432 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 ARSEP51690 589 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 TOMM20Q15388 145 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 NUGGCQ68CJ6 796 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 WDR75Q8IWA0 830 aaKnown RBP8.22□□□□□ -1.09
SCN9A-201ENST00000303354 KCNV2Q8TDN2 545 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 MAGEF1Q9HAY2 307 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 PLAAQ9Y263 795 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 CDC42BPGQ6DT37 1551 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 H0Y3Z8 333 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 RASGRF2O14827 1237 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 PDHBP11177 359 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 ESRRAP11474 423 aaPredicted RBP8.22□□□□□ -1.09
SCN9A-201ENST00000303354 ZNF543Q08ER8 600 aa8.22□□□□□ -1.09
SCN9A-201ENST00000303354 MMS22LQ6ZRQ5 1243 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms