RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 DLL3Q9NYJ7 618 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 BACE2Q9Y5Z0 518 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 PATJQ8NI35 1801 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 ADAM12O43184 909 aa16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 B3GAT3O94766 335 aa16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 FDPSP14324 419 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 CYP11B2P19099 503 aa16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 RPA1P27694 616 aa16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 RPS9P46781 194 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 ORC2Q13416 577 aaPredicted RBP16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 VARS2Q5ST30 1063 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 NOSTRINQ8IVI9 506 aa16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 KXD1Q9BQD3 176 aa16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 CCDC113Q9H0I3 377 aa16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 NCDNQ9UBB6 729 aa16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 DNMT3BQ9UBC3 853 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 MRPS23Q9Y3D9 190 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 NOTCH4Q99466 2003 aa16.27■□□□□ 0.2
CCDC88B-201ENST00000301897 ACACBO00763 2458 aa16.27■□□□□ 0.19
CCDC88B-201ENST00000301897 TRIP11Q15643 1979 aa16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 LRRN2O75325 713 aa16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 CSTF1Q05048 431 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 SAFBQ15424 915 aaKnown RBP eCLIP16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 PADI6Q6TGC4 694 aa16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 ZNF852Q6ZMS4 543 aa16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 ST13P5Q8NFI4 369 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 KIFAP3Q92845 792 aa16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 GTF3C6Q969F1 213 aa16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 CLDN23Q96B33 292 aa16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 DDX27Q96GQ7 796 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 PPP1R10Q96QC0 940 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 FAM126AQ9BYI3 521 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 TOPORSQ9NS56 1045 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 ZSCAN32Q9NX65 697 aa16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 GDAQ9Y2T3 454 aa16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 CDY1Q9Y6F8 540 aa16.26■□□□□ 0.19
CCDC88B-201ENST00000301897 A0A087WWV3 80 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 MED19A0JLT2 244 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 TTLL13PA6NNM8 815 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 MED24O75448 989 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 RHOP08100 348 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 LIG1P18858 919 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 ELF1P32519 619 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 MCM7P33993 719 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 YARSP54577 528 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 UPP1Q16831 310 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 ATF7IP2Q5U623 682 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 HAUS3Q68CZ6 603 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 TPRG1Q6ZUI0 275 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 ZBTB44Q8NCP5 570 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 ZNF461Q8TAF7 563 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 DNASE1L2Q92874 299 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 SLC38A7Q9NVC3 462 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 HCFC1R1Q9NWW0 138 aa16.25■□□□□ 0.19
CCDC88B-201ENST00000301897 PHLPP2Q6ZVD8 1323 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 ARHGEF37A1IGU5 675 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 ZNF197O14709 1029 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 TBC1D4O60343 1298 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 DTNBO60941 627 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 LRG1P02750 347 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 PTPN2P17706 415 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 CLCNKBP51801 687 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 PPP2R5DQ14738 602 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 EEF1DP3Q658K8 133 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 SLC8B1Q6J4K2 584 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 NSUN7Q8NE18 718 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 ING5Q8WYH8 240 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 BSNDQ8WZ55 320 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 ELSPBP1Q96BH3 223 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 IER2Q9BTL4 223 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 CCDC94Q9BW85 323 aaPredicted RBP16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 TMEM60Q9H2L4 133 aa16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 MTF2Q9Y483 593 aaPredicted RBP16.24■□□□□ 0.19
CCDC88B-201ENST00000301897 PRR5-ARHGAP8B1AHC4 643 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 H7C4K7 107 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 MAN2B1O00754 1011 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 WNT7AO00755 349 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 MICAL2O94851 1124 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 TKTP29401 623 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 NRLP54845 237 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 ARHGAP8P85298 464 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 ADCY1Q08828 1119 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 ME3Q16798 604 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 RSPO4Q2I0M5 234 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 DCLK2Q8N568 766 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 NECAB1Q8N987 351 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 NELL1Q92832 810 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 MCRS1Q96EZ8 462 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 EPC1Q9H2F5 836 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 MAFFQ9ULX9 164 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 SMG5Q9UPR3 1016 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 TNFSF13BQ9Y275 285 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 STK24Q9Y6E0 443 aa16.23■□□□□ 0.19
CCDC88B-201ENST00000301897 SMIM28A0A1B0GU29 152 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 K7ERI5 159 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 PRRG1O14668 218 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 SYN3O14994 580 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 ABLIM3O94929 683 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 OR52Z1P0C646 297 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 CD72P21854 359 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms