RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 PRAMEF19Q5SWL8 479 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 DCAF12L1Q5VU92 463 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 TMEM192Q8IY95 271 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 ATP8B4Q8TF62 1192 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 CPB2Q96IY4 423 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 C11orf70Q9BRQ4 267 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 MINDY3Q9H8M7 445 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 ANAPC7Q9UJX3 599 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 ADAM21Q9UKJ8 722 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 NENFQ9UMX5 172 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 PTPN22Q9Y2R2 807 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 NUB1Q9Y5A7 615 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 RBBP6Q7Z6E9 1792 aaKnown RBP12.31□□□□□ -0.44
CUX1-202ENST00000292538 A0A0A6YYK5 440 aaPredicted RBP12.31□□□□□ -0.44
CUX1-202ENST00000292538 RNF40O75150 1001 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 CELF2O95319 508 aaKnown RBP12.31□□□□□ -0.44
CUX1-202ENST00000292538 C4BPAP04003 597 aaKnown RBP12.31□□□□□ -0.44
CUX1-202ENST00000292538 INSRRP14616 1297 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 MYL6P60660 151 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 ZACNQ401N2 412 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 KCTD16Q68DU8 428 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 RHOT2Q8IXI1 618 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 TSEN2Q8NCE0 465 aaKnown RBP12.31□□□□□ -0.44
CUX1-202ENST00000292538 TRIM51Q9BSJ1 452 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 MROH8Q9H579 483 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 RABEP2Q9H5N1 569 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 KIAA1586Q9HCI6 787 aa12.31□□□□□ -0.44
CUX1-202ENST00000292538 GNA15P30679 374 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 NSFP46459 744 aaKnown RBP12.3□□□□□ -0.44
CUX1-202ENST00000292538 GABPB1Q06547 395 aaPredicted RBP12.3□□□□□ -0.44
CUX1-202ENST00000292538 IER5Q5VY09 327 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 SCFD2Q8WU76 684 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 ZC3H15Q8WU90 426 aaKnown RBP12.3□□□□□ -0.44
CUX1-202ENST00000292538 HES6Q96HZ4 224 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 FAM167AQ96KS9 214 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 CEP89Q96ST8 783 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 ZMYND15Q9H091 742 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 SMARCAD1Q9H4L7 1026 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 COQ4Q9Y3A0 265 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 RLFQ13129 1914 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 IQCA1LA6NCM1 817 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 DAPK3O43293 454 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 TMEM191BP0C7N4 346 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 SCP2P22307 547 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 RRM1P23921 792 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 MAPK4P31152 587 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 CUL2Q13617 745 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 EEF1DP3Q658K8 133 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 TTC19Q6DKK2 380 aaPredicted RBP12.3□□□□□ -0.44
CUX1-202ENST00000292538 UBL4BQ8N7F7 174 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 ISCUQ9H1K1 167 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 KCNG1Q9UIX4 513 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 PNMA3Q9UL41 463 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 STXBP5LQ9Y2K9 1186 aa12.3□□□□□ -0.44
CUX1-202ENST00000292538 A0A087WZ62 844 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 ZBTB42B2RXF5 422 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 TOM1L1O75674 476 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 LDHAP00338 332 aaKnown RBP12.29□□□□□ -0.44
CUX1-202ENST00000292538 CCNA1P78396 465 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 ATF7IP2Q5U623 682 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 SLFN11Q7Z7L1 901 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 NLRP7Q8WX94 980 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 FAM118BQ9BPY3 351 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 FDXACB1Q9BRP7 624 aaPredicted RBP12.29□□□□□ -0.44
CUX1-202ENST00000292538 FAM49AQ9H0Q0 323 aaPredicted RBP12.29□□□□□ -0.44
CUX1-202ENST00000292538 FAM204AQ9H8W3 233 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 RRAGCQ9HB90 399 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 ERVK-5Q9HDB9 667 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 DDX3YO15523 660 aaKnown RBP12.29□□□□□ -0.44
CUX1-202ENST00000292538 MSCO60682 206 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 IQCF3P0C7M6 154 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 CXCL8P10145 99 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 IBSPP21815 317 aaPredicted RBP12.29□□□□□ -0.44
CUX1-202ENST00000292538 GTF2H1P32780 548 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 EPHB4P54760 987 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 IRX5P78411 483 aaPredicted RBP12.29□□□□□ -0.44
CUX1-202ENST00000292538 DMTNQ08495 405 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 SNX1Q13596 522 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 MXD4Q14582 209 aaPredicted RBP12.29□□□□□ -0.44
CUX1-202ENST00000292538 ACAD10Q6JQN1 1059 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 MAATS1Q7Z4T9 603 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 ACTRT1Q8TDG2 376 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 AENQ8WTP8 325 aaKnown RBP12.29□□□□□ -0.44
CUX1-202ENST00000292538 BRI3BPQ8WY22 251 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 LENG1Q96BZ8 264 aaPredicted RBP12.29□□□□□ -0.44
CUX1-202ENST00000292538 ACO2Q99798 780 aaKnown RBP12.29□□□□□ -0.44
CUX1-202ENST00000292538 CPA4Q9UI42 421 aa12.29□□□□□ -0.44
CUX1-202ENST00000292538 DNAJC25-GNG10A0A024R161 153 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 TCRBV7S2A1N4TA0A589 114 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 ASB14A6NK59 587 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 KRT14P02533 472 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 PYGMP11217 842 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 TMOD1P28289 359 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 RAP1GAPP47736 663 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 PAK2Q13177 524 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 CCDC62Q6P9F0 684 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 ZNF572Q7Z3I7 529 aaPredicted RBP12.28□□□□□ -0.44
CUX1-202ENST00000292538 RBBP8NLQ8NC74 664 aaPredicted RBP12.28□□□□□ -0.44
CUX1-202ENST00000292538 TCP11Q8WWU5 503 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 C18orf8Q96DM3 657 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms