RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 DENND3A2RUS2 1198 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 POTEMA6NI47 508 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 ITIH2P19823 946 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 BLVRAP53004 296 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 CDH6P55285 790 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 OSTNP61366 133 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 ATP2C1P98194 919 aaPredicted RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 PDIA5Q14554 519 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 KPNB1Q14974 876 aaKnown RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 WLSQ5T9L3 541 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 LUZP2Q86TE4 346 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 RMDN1Q96DB5 314 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 SMAD5Q99717 465 aaKnown RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 SPDYE5A6NIY4 337 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 QARSP47897 775 aaKnown RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 Q3C1V9 767 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 SPDYE7PQ495Y7 208 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 MB21D2Q8IYB1 491 aaPredicted RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 FAR2Q96K12 515 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 CCT8L2Q96SF2 557 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 ZSCAN9O15535 394 aaPredicted RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 CENPCQ03188 943 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 TAS2R42Q7RTR8 314 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 CNBD2Q96M20 576 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 DDX47Q9H0S4 455 aaKnown RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 USP32Q8NFA0 1604 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 TRPC5OSA6NMA1 111 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 PIGHQ14442 188 aaPredicted RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 TTLL4Q14679 1199 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 LLGL1Q15334 1064 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 USPL1Q5W0Q7 1092 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 TRPM8Q7Z2W7 1104 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 RHPN2Q8IUC4 686 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 SPATA4Q8NEY3 305 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 LXNQ9BS40 222 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 CYP4F11Q9HBI6 524 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 CASS4Q9NQ75 786 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 PCDHA6Q9UN73 950 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 PCDHA8Q9Y5H6 950 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 IL18RAPO95256 599 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 EIF2AK2P19525 551 aaKnown RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 SRLQ86TD4 932 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 GSPT2Q8IYD1 628 aaKnown RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 ATPAF2Q8N5M1 289 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 SYN2Q92777 582 aaPredicted RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 ZFYVE19Q96K21 471 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 HDAC6Q9UBN7 1215 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 AURKCQ9UQB9 309 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 TTC39BQ5VTQ0 682 aaPredicted RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 RASGRP2Q7LDG7 609 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 DCUN1D1Q96GG9 259 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 PDLIM2Q96JY6 352 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 FRMD8P1Q9BZ68 369 aaPredicted RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 KRCC1Q9NPI7 259 aaPredicted RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 TTC7AQ9ULT0 858 aaPredicted RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 PALLDQ8WX93 1383 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 E9PCH4 1651 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 TRIM49BA6NDI0 452 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 ARPP19P56211 112 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 EIF3EP60228 445 aaKnown RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 ACTN3Q08043 901 aaPredicted RBP8.39□□□□□ -1.07
LIMD1-201ENST00000273317 DUOXA2Q1HG44 320 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 RRM2BQ7LG56 351 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 DNAJC9Q8WXX5 260 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 INPP5FQ9Y2H2 1132 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 SESN1Q9Y6P5 492 aa8.39□□□□□ -1.07
LIMD1-201ENST00000273317 SSU72P8A0A1W2PR75 194 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 FGFR4P22455 802 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 FAM196AQ6ZSG2 479 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 AFG1LQ8WV93 481 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 CNPY3Q9BT09 278 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.38□□□□□ -1.07
LIMD1-201ENST00000273317 NCK2O43639 380 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 FAM107AO95990 144 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 ATP1A1P05023 1023 aaKnown RBP8.38□□□□□ -1.07
LIMD1-201ENST00000273317 PIGOQ8TEQ8 1089 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 PLEKHA5Q9HAU0 1116 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 PIH1D3Q9NQM4 214 aaKnown RBP8.38□□□□□ -1.07
LIMD1-201ENST00000273317 A0A087WWV3 80 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 ENO1P06733 434 aaKnown RBP8.38□□□□□ -1.07
LIMD1-201ENST00000273317 CHN1P15882 459 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 DDI1Q8WTU0 396 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 EME1Q96AY2 570 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 FAM167BQ9BTA0 163 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 A0A1W2PQJ5 194 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 MTSS1O43312 755 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 DNAJC6O75061 913 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 CSTF3Q12996 717 aaKnown RBP8.38□□□□□ -1.07
LIMD1-201ENST00000273317 STX3Q13277 289 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 RABGAP1LQ5R372 815 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 ELOA2Q8IYF1 753 aaPredicted RBP8.38□□□□□ -1.07
LIMD1-201ENST00000273317 OR6P1Q8NGX9 317 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 SH3KBP1Q96B97 665 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 TNIP3Q96KP6 325 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 AGPAT1Q99943 283 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 TTC26A0AVF1 554 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 PRPF4O43172 522 aaKnown RBP eCLIP8.38□□□□□ -1.07
LIMD1-201ENST00000273317 TPI1P60174 286 aa8.38□□□□□ -1.07
LIMD1-201ENST00000273317 ACBD5Q5T8D3 534 aaPredicted RBP8.38□□□□□ -1.07
LIMD1-201ENST00000273317 C19orf60Q96EN9 201 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms