RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 TRIM54Q9BYV2 358 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 CCL15-CCL14A0A0B4J2E2 113 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 NCAPHQ15003 741 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 CCL15Q16663 113 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 PLA2G4FQ68DD2 849 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 FAM151AQ8WW52 585 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 TGS1Q96RS0 853 aaKnown RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 XAB2Q9HCS7 855 aaKnown RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 CASS4Q9NQ75 786 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 ZBTB12Q9Y330 459 aaPredicted RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 TEX33O43247 280 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 UPP2O95045 317 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 NPTXRO95502 500 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 PDHBP11177 359 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 HSD17B4P51659 736 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 SGSM1Q2NKQ1 1148 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 ZC3H18Q86VM9 953 aaKnown RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 GLYCTKQ8IVS8 523 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 CCNYL1Q8N7R7 359 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 STKLD1Q8NE28 680 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 VCPKMTQ9H867 229 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 HDAC6Q9UBN7 1215 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 C17orf102A2RUQ5 167 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 AP3B1O00203 1094 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 RGS7P49802 495 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 PTK2BQ14289 1009 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 E2F5Q15329 346 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 EFCAB12Q6NXP0 572 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 KDELC2Q7Z4H8 507 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 IGDCC4Q8TDY8 1250 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 HPS3Q969F9 1004 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 MTBPQ96DY7 904 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 LRRC37BQ96QE4 947 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 CYTH2Q99418 400 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 TAF1DQ9H5J8 278 aaPredicted RBP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 COG4Q9H9E3 785 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 EIF3DO15371 548 aaKnown RBP eCLIP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 ATP9BO43861 1147 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 EXTL3O43909 919 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 E2F6O75461 281 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 ATP1A1P05023 1023 aaKnown RBP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 DDX5P17844 614 aaKnown RBP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 CYP2B6P20813 491 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 EEF1DP29692 281 aaKnown RBP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 MAGOHP61326 146 aaKnown RBP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 PPP2R2AP63151 447 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 PPP4R4Q6NUP7 873 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 ANKMY2Q8IV38 441 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 RUBCNQ92622 972 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 ELMO2Q96JJ3 720 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 MCEEQ96PE7 176 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 SLC13A1Q9BZW2 595 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 SCOCQ9UIL1 159 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 MAGEB2O15479 319 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 GYG2O15488 501 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 CSF1RP07333 972 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 C6orf222P0C671 652 aaPredicted RBP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 ST8SIA6P61647 398 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 TRIM28Q13263 835 aaKnown RBP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 NCOA4Q13772 614 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 SNRNP35Q16560 246 aaKnown RBP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 SEPT1Q8WYJ6 367 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 NEUROG2Q9H2A3 272 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 LIMA1Q9UHB6 759 aaKnown RBP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 MAD2L2Q9UI95 211 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 CASZ1Q86V15 1759 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 TTC26A0AVF1 554 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 FASTKD1Q53R41 847 aaKnown RBP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 METTL16Q86W50 562 aaKnown RBP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 SLC35G2Q8TBE7 412 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 LZICQ8WZA0 190 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 STK33Q9BYT3 514 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 UNC45AQ9H3U1 944 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 DIAPH2O60879 1101 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 ATP5HO75947 161 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 PYGLP06737 847 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 ATXN7L3BQ96GX2 97 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 POLR3CQ9BUI4 534 aaPredicted RBP9.19□□□□□ -0.94
PTCD3-201ENST00000254630 TMEM39BQ9GZU3 492 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 ECT2Q9H8V3 914 aa9.19□□□□□ -0.94
PTCD3-201ENST00000254630 CNTNAP5Q8WYK1 1306 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 PRRG1O14668 218 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 PHF2O75151 1096 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 SETSIPP0DME0 302 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 MAP4P27816 1152 aaKnown RBP9.18□□□□□ -0.94
PTCD3-201ENST00000254630 SNRPFP62306 86 aaKnown RBP9.18□□□□□ -0.94
PTCD3-201ENST00000254630 CLEC10AQ8IUN9 316 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 TBC1D19Q8N5T2 526 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 TEKT4Q8WW24 435 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 CLCA2Q9UQC9 943 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 SNX9Q9Y5X1 595 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 RASA1P20936 1047 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 SCP2P22307 547 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 FGFR4P22455 802 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 ATICP31939 592 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 FMO5P49326 533 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 GTF2A2P52657 109 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 PDAP1Q13442 181 aaKnown RBP9.18□□□□□ -0.94
PTCD3-201ENST00000254630 ITPK1Q13572 414 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 FBXO38Q6PIJ6 1188 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms