RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 RAB15P59190 212 aa3.78□□□□□ -1.81
SCN1A-221ENST00000641996 AP3B2Q13367 1082 aa3.78□□□□□ -1.81
SCN1A-221ENST00000641996 SNW1Q13573 536 aaKnown RBP3.78□□□□□ -1.81
SCN1A-221ENST00000641996 KRT24Q2M2I5 525 aa3.78□□□□□ -1.81
SCN1A-221ENST00000641996 DGKKQ5KSL6 1271 aa3.78□□□□□ -1.81
SCN1A-221ENST00000641996 PTRHD1Q6GMV3 140 aaKnown RBP3.78□□□□□ -1.81
SCN1A-221ENST00000641996 FETUBQ9UGM5 382 aa3.78□□□□□ -1.81
SCN1A-221ENST00000641996 CNOT7Q9UIV1 285 aaKnown RBP3.78□□□□□ -1.81
SCN1A-221ENST00000641996 GMEB2Q9UKD1 530 aa3.78□□□□□ -1.81
SCN1A-221ENST00000641996 PCDHB3Q9Y5E6 796 aa3.78□□□□□ -1.81
SCN1A-221ENST00000641996 GAKO14976 1311 aa3.78□□□□□ -1.81
SCN1A-221ENST00000641996 WDR91A4D1P6 747 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 TXNL1O43396 289 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 HNF4AP41235 474 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SERPINB8P50452 374 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 C19orf35Q6ZS72 473 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 MARK2Q7KZI7 788 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 TCP11L2Q8N4U5 519 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ST7LQ8TDW4 575 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CALML4Q96GE6 196 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 DIABLOQ9NR28 239 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ZFP57Q9NU63 452 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 STMN3Q9NZ72 180 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 RIMKLBQ9ULI2 386 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 DNAJC13O75165 2243 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 KLHL18O94889 574 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 GDF11O95390 407 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 RD3LP0DJH9 198 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 NELFEP18615 380 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 NOS2P35228 1153 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF674Q2M3X9 581 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ATAD2Q6PL18 1390 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 IKBIPQ70UQ0 350 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 LRRC34Q8IZ02 419 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 DTX3LQ8TDB6 740 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 TATDN2Q93075 761 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ALPK1Q96QP1 1244 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 PHF2O75151 1096 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 C21orf58P58505 322 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SF3A3Q12874 501 aaKnown RBP eCLIP3.77□□□□□ -1.812e-17■■■■■ 37.8
SCN1A-221ENST00000641996 SQLEQ14534 574 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 DALRD3Q5D0E6 543 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 FAM76BQ5HYJ3 339 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SPERTQ8NA61 448 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CAB39Q9Y376 341 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 TK2O00142 265 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 UFL1O94874 794 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 FDPSP14324 419 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ENPP1P22413 925 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 EIF4G2P78344 907 aaKnown RBP eCLIP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ABATP80404 500 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 UGT3A2Q3SY77 523 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 STKLD1Q8NE28 680 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 RABGGTAQ92696 567 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CHMP6Q96FZ7 201 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CALN1Q9BXU9 219 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 MYLK2Q9H1R3 596 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ATP13A1Q9HD20 1204 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 MLXQ9UH92 298 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 VWA3AA6NCI4 1184 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 NR1I2O75469 434 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 GGPS1O95749 300 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 TFPTP0C1Z6 253 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 DBTP11182 482 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 GJA1P17302 382 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 GBE1Q04446 702 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ZCWPW2Q504Y3 356 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 C1orf146Q5VVC0 180 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 DPPA2Q7Z7J5 298 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 C7orf31Q8N865 590 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CLP1Q92989 425 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 RMDN3Q96TC7 470 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SMYD3Q9H7B4 428 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 LNPEPQ9UIQ6 1025 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 KIAA1257Q9ULG3 409 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SPDYE2BA6NHP3 402 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 VAMP4O75379 141 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 MBP02144 154 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SPDYE6P0CI01 402 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SP140Q13342 867 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SPDYE2Q495Y8 402 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 C1orf141Q5JVX7 400 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 MILR1Q7Z6M3 343 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 KLHL7Q8IXQ5 586 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CCNYL1Q8N7R7 359 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 MRPL1Q9BYD6 325 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 LIN28AQ9H9Z2 209 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CLEC11AQ9Y240 323 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ITGB6P18564 788 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 TCN1P20061 433 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 MSR1P21757 451 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 TRIM32Q13049 653 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 TSC22D1Q15714 1073 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 GFOD2Q3B7J2 385 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 PPP1R26Q5T8A7 1209 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 FBXO42Q6P3S6 717 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ALKBH5Q6P6C2 394 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 PGM2L1Q6PCE3 622 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 C16orf59Q7L2K0 433 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 AVL9Q8NBF6 648 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms