RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 PNOCQ13519 176 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 CUL4BQ13620 913 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 MORC3Q14149 939 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 NOLC1Q14978 699 aaKnown RBP eCLIP10.77□□□□□ -0.69
CLN3-261ENST00000637686 SKIV2LQ15477 1246 aaKnown RBP10.77□□□□□ -0.69
CLN3-261ENST00000637686 SEZ6Q53EL9 994 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 TMEM173Q86WV6 379 aaPredicted RBP10.77□□□□□ -0.69
CLN3-261ENST00000637686 MAP4K3Q8IVH8 894 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 COLGALT2Q8IYK4 626 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 MLKLQ8NB16 471 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 MICAL1Q8TDZ2 1067 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 HPS3Q969F9 1004 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 ACAP3Q96P50 834 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 TMEM175Q9BSA9 504 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 CCDC94Q9BW85 323 aaPredicted RBP10.77□□□□□ -0.69
CLN3-261ENST00000637686 STRA6Q9BX79 667 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 IKZF4Q9H2S9 585 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 PRDM6Q9NQX0 595 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 OLFML3Q9NRN5 406 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 DACH1Q9UI36 760 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 FAN1Q9Y2M0 1017 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 PCDHGC5Q9Y5F6 944 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 ZMYM2Q9UBW7 1377 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 CARNS1A5YM72 827 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 TISP43B9A030 160 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 ANKRD63C9JTQ0 380 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 PTGESO14684 152 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 NRP1O14786 923 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 KLRC4O43908 158 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 RPN1P04843 607 aaKnown RBP10.76□□□□□ -0.69
CLN3-261ENST00000637686 THP07101 528 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 YARSP54577 528 aaKnown RBP10.76□□□□□ -0.69
CLN3-261ENST00000637686 UBE3AQ05086 875 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 TYRO3Q06418 890 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 EHHADHQ08426 723 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 DSC1Q08554 894 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 GRIK3Q13003 919 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 TIGD5Q53EQ6 642 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 TCEAL5Q5H9L2 206 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 L1TD1Q5T7N2 865 aaKnown RBP10.76□□□□□ -0.69
CLN3-261ENST00000637686 SLC39A4Q6P5W5 647 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 FOXR2Q6PJQ5 311 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 GLIS3Q8NEA6 775 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 BCL7CQ8WUZ0 217 aaPredicted RBP10.76□□□□□ -0.69
CLN3-261ENST00000637686 HVCN1Q96D96 273 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 TMEM169Q96HH4 297 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 IGSF21Q96ID5 467 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 ACCSQ96QU6 501 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 BPIFA3Q9BQP9 254 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 NAT10Q9H0A0 1025 aaKnown RBP10.76□□□□□ -0.69
CLN3-261ENST00000637686 NSUN3Q9H649 340 aaKnown RBP10.76□□□□□ -0.69
CLN3-261ENST00000637686 TLR9Q9NR96 1032 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 PUF60Q9UHX1 559 aaKnown RBP10.76□□□□□ -0.69
CLN3-261ENST00000637686 MAN1B1Q9UKM7 699 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 LZTS1Q9Y250 596 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 PRG3Q9Y2Y8 225 aaPredicted RBP10.76□□□□□ -0.69
CLN3-261ENST00000637686 PCDHB13Q9Y5F0 798 aa10.76□□□□□ -0.69
CLN3-261ENST00000637686 TDRD15B5MCY1 1934 aaKnown RBP10.76□□□□□ -0.69
CLN3-261ENST00000637686 REV3LO60673 3130 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 A0A0B4J269 797 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 F8W810 466 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 FSCN2O14926 492 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 PRPF6O94906 941 aaKnown RBP10.75□□□□□ -0.69
CLN3-261ENST00000637686 PRR29P0C7W0 189 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 TUSC3Q13454 348 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 ALCAMQ13740 583 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 GLRA4Q5JXX5 417 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 ZBTB41Q5SVQ8 909 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 ZNF658Q5TYW1 1059 aaPredicted RBP10.75□□□□□ -0.69
CLN3-261ENST00000637686 PLPP4Q5VZY2 271 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 ALKAL1Q6UXT8 129 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 RABGGTAQ92696 567 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 TCF25Q9BQ70 676 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 MSTO1Q9BUK6 570 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 GZF1Q9H116 711 aaPredicted RBP10.75□□□□□ -0.69
CLN3-261ENST00000637686 TSPY26PQ9H489 355 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 ENTPD7Q9NQZ7 604 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 TOPORSQ9NS56 1045 aaPredicted RBP10.75□□□□□ -0.69
CLN3-261ENST00000637686 MARCH5Q9NX47 278 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 CACNG4Q9UBN1 327 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 EXOC7Q9UPT5 735 aa10.75□□□□□ -0.69
CLN3-261ENST00000637686 PRUNE2Q8WUY3 3088 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 ATG2AQ2TAZ0 1938 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 SMIM28A0A1B0GU29 152 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 CASTOR2A6NHX0 329 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 OGTO15294 1046 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 MEFVO15553 781 aaPredicted RBP10.74□□□□□ -0.69
CLN3-261ENST00000637686 KIF20AO95235 890 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 CXCL8P10145 99 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 ADSSP30520 456 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 TNFSF9P41273 254 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 HYAL1Q12794 435 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 NAB2Q15742 525 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 SLC10A6Q3KNW5 377 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 XKR4Q5GH76 650 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 FAM26FQ5R3K3 315 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 SLFN12LQ6IEE8 588 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 TMC7Q7Z402 723 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 ADGRD2Q7Z7M1 963 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 DDX53Q86TM3 631 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms