RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 AFF1P51825 1210 aaKnown RBP20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 ERVK-21P61565 698 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 ENOX2Q16206 610 aaKnown RBP20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 SLC10A6Q3KNW5 377 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 LRRC55Q6ZSA7 311 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 CD302Q8IX05 232 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 ADSSL1Q8N142 457 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 XXYLT1Q8NBI6 393 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 FAM212AQ96EL1 285 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 ZNF558Q96NG5 402 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 TSG101Q99816 390 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 ZNF576Q9H609 170 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 CWH43Q9H720 699 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 MIOSQ9NXC5 875 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 CNTN3Q9P232 1028 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 HCSTQ9UBK5 93 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 MTUS1Q9ULD2 1270 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 TRAF3IP3Q9Y228 551 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 PCDHB12Q9Y5F1 795 aa20.79■□□□□ 0.92
SQSTM1-216ENST00000626660 PDCD11Q14690 1871 aaKnown RBP20.78■□□□□ 0.92
SQSTM1-216ENST00000626660 BMPR1AP36894 532 aa20.78■□□□□ 0.92
SQSTM1-216ENST00000626660 ALDH7A1P49419 539 aaKnown RBP20.78■□□□□ 0.92
SQSTM1-216ENST00000626660 XKR4Q5GH76 650 aa20.78■□□□□ 0.92
SQSTM1-216ENST00000626660 ALKAL1Q6UXT8 129 aa20.78■□□□□ 0.92
SQSTM1-216ENST00000626660 COLGALT1Q8NBJ5 622 aa20.78■□□□□ 0.92
SQSTM1-216ENST00000626660 GSTCDQ8NEC7 633 aa20.78■□□□□ 0.92
SQSTM1-216ENST00000626660 DHTKD1Q96HY7 919 aaPredicted RBP20.78■□□□□ 0.92
SQSTM1-216ENST00000626660 C17orf80Q9BSJ5 609 aa20.78■□□□□ 0.92
SQSTM1-216ENST00000626660 NRDE2Q9H7Z3 1164 aa20.78■□□□□ 0.92
SQSTM1-216ENST00000626660 SLC38A7Q9NVC3 462 aa20.78■□□□□ 0.92
SQSTM1-216ENST00000626660 SMIM28A0A1B0GU29 152 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 TTC26A0AVF1 554 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 ZNF233A6NK53 670 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 LACTBL1A8MY62 500 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 TULP1O00294 542 aaPredicted RBP20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 PTGESO14684 152 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 EXOC3O60645 756 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 IL18RAPO95256 599 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 NR3C1P04150 777 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 RB1P06400 928 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 KCNE1P15382 129 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 RPL13P26373 211 aaKnown RBP20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 MYBPC2Q14324 1141 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 EPC2Q52LR7 807 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 GLRA4Q5JXX5 417 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 CRELD2Q6UXH1 353 aaPredicted RBP20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 ZNF280BQ86YH2 543 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 SLC9A9Q8IVB4 645 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 BRSK2Q8IWQ3 736 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 FBXO22Q8NEZ5 403 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 ARNTL2Q8WYA1 636 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 TSPAN18Q96SJ8 248 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 TMEM175Q9BSA9 504 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 PLVAPQ9BX97 442 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 CERS4Q9HA82 394 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 MTMR10Q9NXD2 777 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 RBAKQ9NYW8 714 aaPredicted RBP20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 ANK1P16157 1881 aa20.77■□□□□ 0.92
SQSTM1-216ENST00000626660 XPOTO43592 962 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 DDHD2O94830 711 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 BMP6P22004 513 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 PPM1AP35813 382 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 BCAR1P56945 870 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 TUSC3Q13454 348 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 KLHL40Q2TBA0 621 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 SKOR2Q2VWA4 1001 aaPredicted RBP20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 EDRF1Q3B7T1 1238 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 KLHL10Q6JEL2 608 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 KCNT2Q6UVM3 1135 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 ZSWIM2Q8NEG5 633 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 P2RX5Q93086 422 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 KIF12Q96FN5 646 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 PPP1R10Q96QC0 940 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 C11orf84Q9BUA3 381 aaPredicted RBP20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 CXCL16Q9H2A7 254 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 SEMA6BQ9H3T3 888 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 ASB7Q9H672 318 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 PLAGL2Q9UPG8 496 aa20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 LAMA2P24043 3122 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-216ENST00000626660 ALDH2P05091 517 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 ADRB2P07550 413 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 LINC00271P0C7V0 271 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 NR2F2P24468 414 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 CCNE1P24864 410 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 OR1G1P47890 313 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 LRRC63Q05C16 580 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 DSC1Q08554 894 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 SURF1Q15526 300 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 SNRNP35Q16560 246 aaKnown RBP20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 NFIL3Q16649 462 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 CENPPQ6IPU0 288 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 CAVIN1Q6NZI2 390 aaKnown RBP20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 RBM43Q6ZSC3 357 aaKnown RBP20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 SPRED2Q7Z698 418 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 CBWD2Q8IUF1 395 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 COLGALT2Q8IYK4 626 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 MLKLQ8NB16 471 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 TMEM174Q8WUU8 243 aa20.75■□□□□ 0.91
SQSTM1-216ENST00000626660 FBXL18Q96ME1 805 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms