RNA–Protein interactions for RNA: ENST00000621967.4

FAM3A-222, Transcript of family with sequence similarity 3 member A, human

TSL 2

Gene FAM3A, Length 1,901 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FAM3A-222	ENST00000621967	POU5F1	Q01860	360 aa	Known RBP	18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	TRIM32	Q13049	653 aa		18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	HLTF	Q14527	1009 aa	Known RBP eCLIP	18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	IQSEC1	Q6DN90	963 aa		18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	CCDC62	Q6P9F0	684 aa		18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	PADI6	Q6TGC4	694 aa		18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	CYFIP1	Q7L576	1253 aa		18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	CTU1	Q7Z7A3	348 aa	Known RBP	18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	BCAS4	Q8TDM0	211 aa		18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	LRRC45	Q96CN5	670 aa		18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	DBR1	Q9UK59	544 aa	Known RBP	18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	PLAA	Q9Y263	795 aa		18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	ARID2	Q68CP9	1835 aa		18.79	■□□□□ 0.6
FAM3A-222	ENST00000621967	ANKRD62	A6NC57	917 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	HMGB1P1	B2RPK0	211 aa	Predicted RBP	18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967		H0YGN5	161 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967		K7ENM7	598 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	P4HA2	O15460	535 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	DHX15	O43143	795 aa	Known RBP	18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	ZEB2	O60315	1214 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	P4HB	P07237	508 aa	Known RBP	18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	CYBA	P13498	195 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	CNGA1	P29973	690 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	HSD17B3	P37058	310 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	SP4	Q02446	784 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	TNFAIP2	Q03169	654 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	CACNB2	Q08289	660 aa	Predicted RBP	18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	UAP1	Q16222	522 aa	Predicted RBP	18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	DCAF12L1	Q5VU92	463 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	KCTD16	Q68DU8	428 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	INTS8	Q75QN2	995 aa	Known RBP	18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	MAATS1	Q7Z4T9	603 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	SYCP3	Q8IZU3	236 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	VTI1A	Q96AJ9	217 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	CARD9	Q9H257	536 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	NEUROG2	Q9H2A3	272 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	TMEM206	Q9H813	350 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	NFS1	Q9Y697	457 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	AKR1A1	P14550	325 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	TNFAIP3	P21580	790 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	KRT76	Q01546	638 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	TCEAL1	Q15170	157 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	MIER3	Q7Z3K6	550 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	DDX42	Q86XP3	938 aa	Known RBP eCLIP	18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	DHX37	Q8IY37	1157 aa	Known RBP	18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	CCDC26	Q8TAB7	109 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	ARHGEF26	Q96DR7	871 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	TMBIM4	Q9HC24	238 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	LARS	Q9P2J5	1176 aa	Known RBP	18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	SLC9A2	Q9UBY0	812 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	AMACR	Q9UHK6	382 aa		18.78	■□□□□ 0.6
FAM3A-222	ENST00000621967	DOCK5	Q9H7D0	1870 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	FOXN3	O00409	490 aa	Predicted RBP	18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	INHA	P05111	366 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	KRT13	P13646	458 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	SMPD1	P17405	629 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	NR1D1	P20393	614 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	MAGEA9	P43362	315 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	CCT5	P48643	541 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	MCCD1	P59942	119 aa	Predicted RBP	18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	PDCL	Q13371	301 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	DUSP28	Q4G0W2	176 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	EPC2	Q52LR7	807 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	METTL7B	Q6UX53	244 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	PALB2	Q86YC2	1186 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	AGPAT1	Q99943	283 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	TAS2R14	Q9NYV8	317 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	SAMM50	Q9Y512	469 aa		18.77	■□□□□ 0.6
FAM3A-222	ENST00000621967	MAPK13	O15264	365 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	FARP2	O94887	1054 aa	Predicted RBP	18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	LYPLA2	O95372	231 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	GH1	P01241	217 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	ABCB4	P21439	1286 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	ARHGAP44	Q17R89	818 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	CELF3	Q5SZQ8	465 aa	Known RBP	18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	TMEM63B	Q5T3F8	832 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	GJC2	Q5T442	439 aa	Predicted RBP	18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	TRPV1	Q8NER1	839 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	COPS5	Q92905	334 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	RNPC3	Q96LT9	517 aa	Known RBP	18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	THAP2	Q9H0W7	228 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	ST6GALNAC4	Q9H4F1	302 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	USP20	Q9Y2K6	914 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	EMSY	Q7Z589	1322 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	NOP56	O00567	594 aa	Known RBP	18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	PMM2	O15305	246 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	FGG	P02679	453 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	RARRES1	P49788	294 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	PTEN	P60484	403 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	DLG4	P78352	724 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	PPP2R5E	Q16537	467 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	CEP85L	Q5SZL2	805 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	C1orf220	Q5T0J3	134 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	TTC19	Q6DKK2	380 aa	Predicted RBP	18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	ZNF746	Q6NUN9	644 aa	Predicted RBP	18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	RHOT2	Q8IXI1	618 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	SH3TC2	Q8TF17	1288 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	ACCS	Q96QU6	501 aa		18.76	■□□□□ 0.59
FAM3A-222	ENST00000621967	FAM107B	Q9H098	131 aa		18.76	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms