RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SYCE3A1L190 88 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 GOLGA8IPA6NC78 632 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 GOLGA8JA6NMD2 632 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 GRXCR1A8MXD5 290 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 ADRB2P07550 413 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 CXCL8P10145 99 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 NR2F2P24468 414 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 XKR4Q5GH76 650 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 CT47A1Q5JQC4 288 aaPredicted RBP21.46■■□□□ 1.03
UPF3A-211ENST00000618700 ALKAL1Q6UXT8 129 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 BRSK2Q8IWQ3 736 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 GSTCDQ8NEC7 633 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 ZFP42Q96MM3 310 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 MED15Q96RN5 788 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 TSG101Q99816 390 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 KIAA1586Q9HCI6 787 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 TOPORSQ9NS56 1045 aaPredicted RBP21.46■■□□□ 1.03
UPF3A-211ENST00000618700 DACH1Q9UI36 760 aa21.46■■□□□ 1.03
UPF3A-211ENST00000618700 CITO14578 2027 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 TTC26A0AVF1 554 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 BICDL2A1A5D9 508 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 ARL5CA6NH57 179 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 ERCC5P28715 1186 aaPredicted RBP21.45■■□□□ 1.02
UPF3A-211ENST00000618700 AFF1P51825 1210 aaKnown RBP21.45■■□□□ 1.02
UPF3A-211ENST00000618700 YARSP54577 528 aaKnown RBP21.45■■□□□ 1.02
UPF3A-211ENST00000618700 SLC10A6Q3KNW5 377 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 NOMO2Q5JPE7 1267 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 LRRC55Q6ZSA7 311 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 CBWD2Q8IUF1 395 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 CMTR2Q8IYT2 770 aaKnown RBP21.45■■□□□ 1.02
UPF3A-211ENST00000618700 YME1L1Q96TA2 773 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 GAD1Q99259 594 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 RAD9AQ99638 391 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 DUSP9Q99956 384 aaKnown RBP21.45■■□□□ 1.02
UPF3A-211ENST00000618700 CXCL16Q9H2A7 254 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 RPF1Q9H9Y2 349 aaKnown RBP21.45■■□□□ 1.02
UPF3A-211ENST00000618700 PLEKHA5Q9HAU0 1116 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 KLK14Q9P0G3 267 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 CNTN3Q9P232 1028 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 INSL6Q9Y581 213 aa21.45■■□□□ 1.02
UPF3A-211ENST00000618700 GBF1Q92538 1859 aa21.44■■□□□ 1.02
UPF3A-211ENST00000618700 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.44■■□□□ 1.02
UPF3A-211ENST00000618700 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.44■■□□□ 1.02
UPF3A-211ENST00000618700 PTGESO14684 152 aa21.44■■□□□ 1.02
UPF3A-211ENST00000618700 TLL1O43897 1013 aa21.44■■□□□ 1.02
UPF3A-211ENST00000618700 EXOC3O60645 756 aa21.44■■□□□ 1.02
UPF3A-211ENST00000618700 RPL13P26373 211 aaKnown RBP21.44■■□□□ 1.02
UPF3A-211ENST00000618700 RABGGTBP53611 331 aa21.44■■□□□ 1.02
UPF3A-211ENST00000618700 HSP90AA2PQ14568 343 aaPredicted RBP21.44■■□□□ 1.02
UPF3A-211ENST00000618700 SNRNP35Q16560 246 aaKnown RBP21.44■■□□□ 1.02
UPF3A-211ENST00000618700 C11orf57Q6ZUT1 292 aaPredicted RBP21.44■■□□□ 1.02
UPF3A-211ENST00000618700 ABI1Q8IZP0 508 aa21.44■■□□□ 1.02
UPF3A-211ENST00000618700 ZBED2Q9BTP6 218 aa21.44■■□□□ 1.02
UPF3A-211ENST00000618700 RBAKQ9NYW8 714 aaPredicted RBP21.44■■□□□ 1.02
UPF3A-211ENST00000618700 INPP5FQ9Y2H2 1132 aa21.44■■□□□ 1.02
UPF3A-211ENST00000618700 ANK1P16157 1881 aa21.43■■□□□ 1.02
UPF3A-211ENST00000618700 ZNF233A6NK53 670 aa21.43■■□□□ 1.02
UPF3A-211ENST00000618700 TBKBP1A7MCY6 615 aa21.43■■□□□ 1.02
UPF3A-211ENST00000618700 CASP4P49662 377 aa21.43■■□□□ 1.02
UPF3A-211ENST00000618700 SCNN1GP51170 649 aa21.43■■□□□ 1.02
UPF3A-211ENST00000618700 STX17P56962 302 aa21.43■■□□□ 1.02
UPF3A-211ENST00000618700 FKBP3Q00688 224 aaKnown RBP21.43■■□□□ 1.02
UPF3A-211ENST00000618700 MRPL9Q9BYD2 267 aaKnown RBP21.43■■□□□ 1.02
UPF3A-211ENST00000618700 MIOSQ9NXC5 875 aa21.43■■□□□ 1.02
UPF3A-211ENST00000618700 PLAGL2Q9UPG8 496 aa21.43■■□□□ 1.02
UPF3A-211ENST00000618700 PCDHA11Q9Y5I1 949 aa21.43■■□□□ 1.02
UPF3A-211ENST00000618700 PDCD11Q14690 1871 aaKnown RBP21.43■■□□□ 1.02
UPF3A-211ENST00000618700 AKAP3O75969 853 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 CCDC192P0DO97 292 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 KCNE1P15382 129 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 WNT7BP56706 349 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 PPP2R3AQ06190 1150 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 ADAM9Q13443 819 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 LRIT3Q3SXY7 679 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 PAN2Q504Q3 1202 aaKnown RBP21.42■■□□□ 1.02
UPF3A-211ENST00000618700 LRRC43Q8N309 656 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 URGCPQ8TCY9 931 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 ZMAT2Q96NC0 199 aaKnown RBP21.42■■□□□ 1.02
UPF3A-211ENST00000618700 PPP1R10Q96QC0 940 aaKnown RBP21.42■■□□□ 1.02
UPF3A-211ENST00000618700 RPS6KC1Q96S38 1066 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 MKNK1Q9BUB5 465 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 ASB7Q9H672 318 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 TBC1D13Q9NVG8 400 aa21.42■■□□□ 1.02
UPF3A-211ENST00000618700 CHD9Q3L8U1 2897 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 SMIM28A0A1B0GU29 152 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 LCHNA4D1U4 455 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 LACTBL1A8MY62 500 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 CETN3O15182 167 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 MAPK13O15264 365 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 IL18RAPO95256 599 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 SMAD3P84022 425 aaKnown RBP21.41■■□□□ 1.02
UPF3A-211ENST00000618700 CYP24A1Q07973 514 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 GRIK3Q13003 919 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 NAB2Q15742 525 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 CEP135Q66GS9 1140 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 CD302Q8IX05 232 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 RDH13Q8NBN7 331 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 NOC3LQ8WTT2 800 aaKnown RBP21.41■■□□□ 1.02
UPF3A-211ENST00000618700 EEF2KMTQ96G04 330 aa21.41■■□□□ 1.02
UPF3A-211ENST00000618700 MFSD14AQ96MC6 490 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms