RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CEP89Q96ST8 783 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 UTP14AQ9BVJ6 771 aaKnown RBP5.62□□□□□ -1.51
LINC00540-201ENST00000611481 JAM3Q9BX67 310 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 OGDHLQ9ULD0 1010 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 NUB1Q9Y5A7 615 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 PPP2R3BQ9Y5P8 575 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 MAP3K15Q6ZN16 1313 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 UNC79Q9P2D8 2635 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 WDFY4Q6ZS81 3184 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 USP34Q70CQ2 3546 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 ANKRD62A6NC57 917 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 H0Y858 1186 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 NARSO43776 548 aaKnown RBP5.61□□□□□ -1.51
LINC00540-201ENST00000611481 ENO2P09104 434 aaPredicted RBP5.61□□□□□ -1.51
LINC00540-201ENST00000611481 SNRPA1P09661 255 aaKnown RBP5.61□□□□□ -1.51
LINC00540-201ENST00000611481 TUSC3Q13454 348 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 VGLL4Q14135 290 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 LTBP2Q14767 1821 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 PSME4Q14997 1843 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 LSM12Q3MHD2 195 aaKnown RBP5.61□□□□□ -1.51
LINC00540-201ENST00000611481 PAN2Q504Q3 1202 aaKnown RBP5.61□□□□□ -1.51
LINC00540-201ENST00000611481 FUKQ8N0W3 1084 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 BADQ92934 168 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 TRIM8Q9BZR9 551 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 ZFHX2Q9C0A1 2572 aaPredicted RBP5.61□□□□□ -1.51
LINC00540-201ENST00000611481 GPR27Q9NS67 375 aa5.61□□□□□ -1.51
LINC00540-201ENST00000611481 MGAMO43451 1857 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 LRRC37A2A6NM11 1700 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.6□□□□□ -1.51
LINC00540-201ENST00000611481 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.6□□□□□ -1.51
LINC00540-201ENST00000611481 MED19A0JLT2 244 aaPredicted RBP5.6□□□□□ -1.51
LINC00540-201ENST00000611481 CLRN2A0PK11 232 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 PDHXO00330 501 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 TNPO2O14787 897 aaKnown RBP5.6□□□□□ -1.51
LINC00540-201ENST00000611481 ACO1P21399 889 aaKnown RBP5.6□□□□□ -1.51
LINC00540-201ENST00000611481 ID4P47928 161 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 PFKPQ01813 784 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 SNAPC2Q13487 334 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 ACAP1Q15027 740 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 PARP10Q53GL7 1025 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 IL17REQ8NFR9 667 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 TESK2Q96S53 571 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 VEZTQ9HBM0 779 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 ACTR10Q9NZ32 417 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 ZNF318Q5VUA4 2279 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 C5orf42Q9H799 3197 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 ANKRD36CQ5JPF3 1778 aa5.6□□□□□ -1.51
LINC00540-201ENST00000611481 ZNF804BA4D1E1 1349 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 ERC2O15083 957 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 SMAD7O15105 426 aaKnown RBP5.59□□□□□ -1.51
LINC00540-201ENST00000611481 HMGCRP04035 888 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 HMOX1P09601 288 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 ZNF888P0CJ79 500 aaPredicted RBP5.59□□□□□ -1.51
LINC00540-201ENST00000611481 ERCC5P28715 1186 aaPredicted RBP5.59□□□□□ -1.51
LINC00540-201ENST00000611481 MAP4K2Q12851 820 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 DLGAP5Q15398 846 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 TNNI3KQ59H18 835 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 DACT2Q5SW24 774 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 LARP1BQ659C4 914 aaKnown RBP5.59□□□□□ -1.51
LINC00540-201ENST00000611481 OTOP3Q7RTS5 596 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 POLNQ7Z5Q5 900 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 ZNF575Q86XF7 245 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 RBM12BQ8IXT5 1001 aaKnown RBP5.59□□□□□ -1.51
LINC00540-201ENST00000611481 PRSS33Q8NF86 280 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 KCTD13Q8WZ19 329 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 FAM89AQ96GI7 184 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 ZBED3Q96IU2 234 aaPredicted RBP5.59□□□□□ -1.51
LINC00540-201ENST00000611481 SENP6Q9GZR1 1112 aaPredicted RBP5.59□□□□□ -1.51
LINC00540-201ENST00000611481 IKZF4Q9H2S9 585 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 RALYQ9UKM9 306 aaKnown RBP5.59□□□□□ -1.51
LINC00540-201ENST00000611481 XIRP2A4UGR9 3374 aa5.59□□□□□ -1.51
LINC00540-201ENST00000611481 MAST2Q6P0Q8 1798 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 MYO3BQ8WXR4 1341 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 ZNF839A8K0R7 811 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 B2RBV5 119 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 CUTAO60888 179 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 DDAH1O94760 285 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 CAPNS1P04632 268 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 CR2P20023 1033 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 HDLBPQ00341 1268 aaKnown RBP5.58□□□□□ -1.52
LINC00540-201ENST00000611481 SPIRE1Q08AE8 756 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 RASA3Q14644 834 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 CD276Q5ZPR3 534 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 RSPO2Q6UXX9 243 aaPredicted RBP5.58□□□□□ -1.52
LINC00540-201ENST00000611481 CCDC129Q6ZRS4 1044 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 Q6ZSN1 163 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 ANKRD23Q86SG2 305 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 NOP9Q86U38 636 aaKnown RBP5.58□□□□□ -1.52
LINC00540-201ENST00000611481 C1orf210Q8IVY1 113 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.58□□□□□ -1.52
LINC00540-201ENST00000611481 UHMK1Q8TAS1 419 aaKnown RBP5.58□□□□□ -1.52
LINC00540-201ENST00000611481 PARK7Q99497 189 aaKnown RBP5.58□□□□□ -1.52
LINC00540-201ENST00000611481 OAZ3Q9UMX2 235 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 ATP11BQ9Y2G3 1177 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 INPP5FQ9Y2H2 1132 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 RRP7AQ9Y3A4 280 aaKnown RBP5.58□□□□□ -1.52
LINC00540-201ENST00000611481 PCDHAC2Q9Y5I4 1007 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 SLC30A1Q9Y6M5 507 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 FASNP49327 2511 aaKnown RBP5.58□□□□□ -1.52
LINC00540-201ENST00000611481 NCOR2Q9Y618 2525 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms