RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 NME8Q8N427 588 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 RNF149Q8NC42 400 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 FLCNQ8NFG4 579 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 SUSD6Q92537 303 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 DHX38Q92620 1227 aaKnown RBP10.35□□□□□ -0.75
TRIM28-208ENST00000597172 DHTKD1Q96HY7 919 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-208ENST00000597172 BPIFA3Q9BQP9 254 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 KCTD10Q9H3F6 313 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 TMEM134Q9H6X4 195 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 MINDY3Q9H8M7 445 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 CBX8Q9HC52 389 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 KCNG1Q9UIX4 513 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 BARX2Q9UMQ3 279 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-208ENST00000597172 AKT3Q9Y243 479 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 A0A087WZ62 844 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 DENND3A2RUS2 1198 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 TRIM49BA6NDI0 452 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 LRRIQ4A6NIV6 560 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 K7ENM7 598 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 PI15O43692 258 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 UPP2O95045 317 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 EDN1P05305 212 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 CCNE1P24864 410 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 ERCC5P28715 1186 aaPredicted RBP10.34□□□□□ -0.75
TRIM28-208ENST00000597172 STX17P56962 302 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 TMEM62Q0P6H9 643 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 PTK7Q13308 1070 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 NCAPHQ15003 741 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 KNOP1Q1ED39 458 aaKnown RBP10.34□□□□□ -0.75
TRIM28-208ENST00000597172 KIZQ2M2Z5 673 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 TRIM71Q2Q1W2 868 aaKnown RBP10.34□□□□□ -0.75
TRIM28-208ENST00000597172 L1TD1Q5T7N2 865 aaKnown RBP10.34□□□□□ -0.75
TRIM28-208ENST00000597172 ANKRD40Q6AI12 368 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 KLHL10Q6JEL2 608 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 TAF2Q6P1X5 1199 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 IFNLR1Q8IU57 520 aaPredicted RBP10.34□□□□□ -0.75
TRIM28-208ENST00000597172 FIBCD1Q8N539 461 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 ENOX1Q8TC92 643 aaKnown RBP10.34□□□□□ -0.75
TRIM28-208ENST00000597172 NELFBQ8WX92 580 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 TOP1MTQ969P6 601 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 NLRP4Q96MN2 994 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 MAP7D2Q96T17 732 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 PPP1R16BQ96T49 567 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 DUSP9Q99956 384 aaKnown RBP10.34□□□□□ -0.75
TRIM28-208ENST00000597172 FDXACB1Q9BRP7 624 aaPredicted RBP10.34□□□□□ -0.75
TRIM28-208ENST00000597172 NFKBIZQ9BYH8 718 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 CCDC113Q9H0I3 377 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 FZD8Q9H461 694 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 RWDD2AQ9UIY3 292 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 CDV3Q9UKY7 258 aaKnown RBP10.34□□□□□ -0.75
TRIM28-208ENST00000597172 TBX20Q9UMR3 447 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 CTNND2Q9UQB3 1225 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 USP20Q9Y2K6 914 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 RALGAPA2Q2PPJ7 1873 aa10.34□□□□□ -0.75
TRIM28-208ENST00000597172 TTLL13PA6NNM8 815 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 PRR5-ARHGAP8B1AHC4 643 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 H0YCG3 227 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 K7ERI5 159 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 CSDE1O75534 798 aaKnown RBP10.33□□□□□ -0.76
TRIM28-208ENST00000597172 CAVIN2O95810 425 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 AOC1P19801 751 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 PPP1R2P41236 205 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 ARHGAP8P85298 464 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 CDC42EP1Q00587 391 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 MBTD1Q05BQ5 628 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 PAK1Q13153 545 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 STIM1Q13586 685 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 ALCAMQ13740 583 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 CAMK1Q14012 370 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 TFDP1Q14186 410 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 ZCWPW2Q504Y3 356 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 TTI2Q6NXR4 508 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 SLC39A4Q6P5W5 647 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 ZNF410Q86VK4 478 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 MAP4K3Q8IVH8 894 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 DBF4BQ8NFT6 615 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 DEPTORQ8TB45 409 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 FAM200AQ8TCP9 573 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 P2RX5Q93086 422 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 ACCSQ96QU6 501 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 RTKNQ9BST9 563 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 OSBPL7Q9BZF2 842 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 NAT10Q9H0A0 1025 aaKnown RBP10.33□□□□□ -0.76
TRIM28-208ENST00000597172 HSD3B7Q9H2F3 369 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 DACH1Q9UI36 760 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 RWDD3Q9Y3V2 267 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 ZMYM2Q9UBW7 1377 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 UBE4BO95155 1302 aa10.33□□□□□ -0.76
TRIM28-208ENST00000597172 MYO18BQ8IUG5 2567 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 TISP43B9A030 160 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 ANKRD63C9JTQ0 380 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 PDXKO00764 312 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 PSMA7O14818 248 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 IKBKBO14920 756 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 KIF20AO95235 890 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 GLP2RO95838 553 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 CHRNA1P02708 482 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 SCP2P22307 547 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 SP100P23497 879 aaPredicted RBP10.32□□□□□ -0.76
TRIM28-208ENST00000597172 PHKA2P46019 1235 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms