RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CASP5P51878 434 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 KCNA1Q09470 495 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 PSMD2Q13200 908 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 SMC1AQ14683 1233 aaKnown RBP16.39■□□□□ 0.21
UPF1-202ENST00000594243 SLC10A6Q3KNW5 377 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 SEZ6Q53EL9 994 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 FAM26FQ5R3K3 315 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 SLC39A4Q6P5W5 647 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 TMEM173Q86WV6 379 aaPredicted RBP16.39■□□□□ 0.21
UPF1-202ENST00000594243 GRAMD1CQ8IYS0 662 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 VPS52Q8N1B4 723 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 POMGNT1Q8WZA1 660 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 HLA-CQ95604 372 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 SNX27Q96L92 541 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 PPP1R10Q96QC0 940 aaKnown RBP16.39■□□□□ 0.21
UPF1-202ENST00000594243 TSPAN18Q96SJ8 248 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 CXCL16Q9H2A7 254 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 RPF1Q9H9Y2 349 aaKnown RBP16.39■□□□□ 0.21
UPF1-202ENST00000594243 CNTN3Q9P232 1028 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 AGO2Q9UKV8 859 aaKnown RBP16.39■□□□□ 0.21
UPF1-202ENST00000594243 PRG3Q9Y2Y8 225 aaPredicted RBP16.39■□□□□ 0.21
UPF1-202ENST00000594243 TCHHQ07283 1943 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 FSD2A1L4K1 749 aa16.38■□□□□ 0.21
UPF1-202ENST00000594243 TADA2AO75478 443 aa16.38■□□□□ 0.21
UPF1-202ENST00000594243 LDHAP00338 332 aaKnown RBP16.38■□□□□ 0.21
UPF1-202ENST00000594243 KCNE1P15382 129 aa16.38■□□□□ 0.21
UPF1-202ENST00000594243 POU5F1Q01860 360 aaKnown RBP16.38■□□□□ 0.21
UPF1-202ENST00000594243 EHHADHQ08426 723 aa16.38■□□□□ 0.21
UPF1-202ENST00000594243 HSP90AA2PQ14568 343 aaPredicted RBP16.38■□□□□ 0.21
UPF1-202ENST00000594243 NAB2Q15742 525 aa16.38■□□□□ 0.21
UPF1-202ENST00000594243 GLRA4Q5JXX5 417 aa16.38■□□□□ 0.21
UPF1-202ENST00000594243 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.38■□□□□ 0.21
UPF1-202ENST00000594243 CD302Q8IX05 232 aa16.38■□□□□ 0.21
UPF1-202ENST00000594243 ZNF507Q8TCN5 953 aa16.38■□□□□ 0.21
UPF1-202ENST00000594243 BCL7CQ8WUZ0 217 aaPredicted RBP16.38■□□□□ 0.21
UPF1-202ENST00000594243 HPS3Q969F9 1004 aa16.38■□□□□ 0.21
UPF1-202ENST00000594243 CCDC47Q96A33 483 aaKnown RBP16.38■□□□□ 0.21
UPF1-202ENST00000594243 UROC1Q96N76 676 aa16.38■□□□□ 0.21
UPF1-202ENST00000594243 TLE6Q9H808 572 aa16.38■□□□□ 0.21
UPF1-202ENST00000594243 CPSF3Q9UKF6 684 aaKnown RBP16.38■□□□□ 0.21
UPF1-202ENST00000594243 SSX2IPQ9Y2D8 614 aa16.38■□□□□ 0.21
UPF1-202ENST00000594243 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.38■□□□□ 0.21
UPF1-202ENST00000594243 PLXNA4Q9HCM2 1894 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 CASTOR2A6NHX0 329 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 FAM189A1O60320 539 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 CXCL14O95715 111 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 CTSAP10619 480 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 GARTP22102 1010 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 TNFSF9P41273 254 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 PPP2R3AQ06190 1150 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 PLPP4Q5VZY2 271 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 DCLRE1AQ6PJP8 1040 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 EPM2AIP1Q7L775 607 aaPredicted RBP16.37■□□□□ 0.21
UPF1-202ENST00000594243 FMR1NBQ8N0W7 255 aaPredicted RBP16.37■□□□□ 0.21
UPF1-202ENST00000594243 MRPL43Q8N983 215 aaKnown RBP16.37■□□□□ 0.21
UPF1-202ENST00000594243 ATXN2LQ8WWM7 1075 aaKnown RBP16.37■□□□□ 0.21
UPF1-202ENST00000594243 DDX27Q96GQ7 796 aaKnown RBP16.37■□□□□ 0.21
UPF1-202ENST00000594243 CDCA3Q99618 268 aaPredicted RBP16.37■□□□□ 0.21
UPF1-202ENST00000594243 FGFBP2Q9BYJ0 223 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 ZBP1Q9H171 429 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 IGFLR1Q9H665 355 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 SLC39A2Q9NP94 309 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 EXOC1Q9NV70 894 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 MARCH5Q9NX47 278 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 THEGQ9P2T0 379 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 ADAM28Q9UKQ2 775 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 UBE4BO95155 1302 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 VCANP13611 3396 aa16.37■□□□□ 0.21
UPF1-202ENST00000594243 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.36■□□□□ 0.21
UPF1-202ENST00000594243 TTC26A0AVF1 554 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 TISP43B9A030 160 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 KIAA0391O15091 583 aaKnown RBP16.36■□□□□ 0.21
UPF1-202ENST00000594243 XPOTO43592 962 aaKnown RBP16.36■□□□□ 0.21
UPF1-202ENST00000594243 KLRC4O43908 158 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 SOD2P04179 222 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 RPN1P04843 607 aaKnown RBP16.36■□□□□ 0.21
UPF1-202ENST00000594243 ADRB2P07550 413 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 CXCL8P10145 99 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 ADSSP30520 456 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 CA8P35219 290 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 NRIP1P48552 1158 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 SNRPFP62306 86 aaKnown RBP16.36■□□□□ 0.21
UPF1-202ENST00000594243 FAM160A1Q05DH4 1040 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 HYAL1Q12794 435 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 AAK1Q2M2I8 961 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 KMT5BQ4FZB7 885 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 ADGRD2Q7Z7M1 963 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 RBM23Q86U06 439 aaKnown RBP16.36■□□□□ 0.21
UPF1-202ENST00000594243 TMEM87AQ8NBN3 555 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 PABPC5Q96DU9 382 aaKnown RBP16.36■□□□□ 0.21
UPF1-202ENST00000594243 ZMAT2Q96NC0 199 aaKnown RBP16.36■□□□□ 0.21
UPF1-202ENST00000594243 PRDM6Q9NQX0 595 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 IRAK3Q9Y616 596 aa16.36■□□□□ 0.21
UPF1-202ENST00000594243 TDRD15B5MCY1 1934 aaKnown RBP16.36■□□□□ 0.21
UPF1-202ENST00000594243 CHD7Q9P2D1 2997 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 LACTBL1A8MY62 500 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 RPL9P32969 192 aaKnown RBP16.35■□□□□ 0.21
UPF1-202ENST00000594243 ACOT2P49753 483 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 CLCNKBP51801 687 aa16.35■□□□□ 0.21
UPF1-202ENST00000594243 DPYDQ12882 1025 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms