RNA–Protein interactions for RNA: ENST00000593597.1

USE1-203, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 587 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-203ENST00000593597 GRASPQ7Z6J2 395 aaPredicted RBP11.78□□□□□ -0.52
USE1-203ENST00000593597 CCDC83Q8IWF9 413 aa11.78□□□□□ -0.52
USE1-203ENST00000593597 DTWD2Q8NBA8 298 aa11.78□□□□□ -0.52
USE1-203ENST00000593597 FGF14Q92915 247 aa11.78□□□□□ -0.52
USE1-203ENST00000593597 CCDC43Q96MW1 224 aaKnown RBP11.78□□□□□ -0.52
USE1-203ENST00000593597 PPP1R10Q96QC0 940 aaKnown RBP11.78□□□□□ -0.52
USE1-203ENST00000593597 IRF2BPLQ9H1B7 796 aa11.78□□□□□ -0.52
USE1-203ENST00000593597 GOLGA2P5Q9HBQ8 144 aa11.78□□□□□ -0.52
USE1-203ENST00000593597 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.78□□□□□ -0.52
USE1-203ENST00000593597 WNT16Q9UBV4 365 aa11.78□□□□□ -0.52
USE1-203ENST00000593597 FBXL21Q9UKT6 434 aa11.78□□□□□ -0.52
USE1-203ENST00000593597 NUMBLQ9Y6R0 609 aa11.78□□□□□ -0.52
USE1-203ENST00000593597 TSC2P49815 1807 aa11.77□□□□□ -0.52
USE1-203ENST00000593597 NRG2O14511 850 aaPredicted RBP11.77□□□□□ -0.53
USE1-203ENST00000593597 N4BP3O15049 544 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 LRRN2O75325 713 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 GLULP15104 373 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 LIG1P18858 919 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 NAMPTP43490 491 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 NCBP1Q09161 790 aaKnown RBP11.77□□□□□ -0.53
USE1-203ENST00000593597 PRPF4BQ13523 1007 aaKnown RBP11.77□□□□□ -0.53
USE1-203ENST00000593597 FAM171A1Q5VUB5 890 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 PARM1Q6UWI2 310 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 TAS1R3Q7RTX0 852 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 ZBTB8OSQ8IWT0 167 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 HACE1Q8IYU2 909 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 DAW1Q8N136 415 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 TMEM130Q8N3G9 435 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 ITFG1Q8TB96 612 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 SNX27Q96L92 541 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 NACC1Q96RE7 527 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 KIF2CQ99661 725 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 TTPALQ9BTX7 342 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 TBC1D17Q9HA65 648 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 HCFC1R1Q9NWW0 138 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 GDAQ9Y2T3 454 aa11.77□□□□□ -0.53
USE1-203ENST00000593597 TICRRQ7Z2Z1 1910 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 ARHGEF35A5YM69 484 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 PP2D1A8MPX8 630 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 TMEM189-UBE2V1I3L0A0 370 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 ABLIM1O14639 778 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 CCL16O15467 120 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 NR1I2O75469 434 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 THP07101 528 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 C8AP07357 584 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 DCNP07585 359 aaKnown RBP11.76□□□□□ -0.53
USE1-203ENST00000593597 FGFR3P22607 806 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 TOB1P50616 345 aaPredicted RBP11.76□□□□□ -0.53
USE1-203ENST00000593597 MAPK7Q13164 816 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 TRIM29Q14134 588 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 IL17AQ16552 155 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 TTC38Q5R3I4 469 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 KCNK18Q7Z418 384 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 CEP57Q86XR8 500 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 STAMQ92783 540 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 DDX27Q96GQ7 796 aaKnown RBP11.76□□□□□ -0.53
USE1-203ENST00000593597 C8orf76Q96K31 380 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 RTP3Q9BQQ7 232 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 FOXQ1Q9C009 403 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 C2orf40Q9H1Z8 148 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 BHMT2Q9H2M3 363 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 PIDD1Q9HB75 910 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 SLC2A4RGQ9NR83 387 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 MTRRQ9UBK8 725 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 DPP7Q9UHL4 492 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 GPR179Q6PRD1 2367 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 CEP250Q9BV73 2442 aa11.76□□□□□ -0.53
USE1-203ENST00000593597 I3L4J1 428 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 FSHRP23945 695 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 TKTP29401 623 aaKnown RBP11.75□□□□□ -0.53
USE1-203ENST00000593597 BRCC3P46736 316 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 FXR2P51116 673 aaKnown RBP eCLIP11.75□□□□□ -0.53
USE1-203ENST00000593597 CLCNKBP51801 687 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 GPC5P78333 572 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 MAPK6Q16659 721 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 ATF7IP2Q5U623 682 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.75□□□□□ -0.53
USE1-203ENST00000593597 MAML2Q8IZL2 1156 aaPredicted RBP11.75□□□□□ -0.53
USE1-203ENST00000593597 FBXO18Q8NFZ0 1043 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 DEPTORQ8TB45 409 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 SLC7A14Q8TBB6 771 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 ZMAT2Q96NC0 199 aaKnown RBP11.75□□□□□ -0.53
USE1-203ENST00000593597 MMTAG2Q9BU76 263 aaKnown RBP11.75□□□□□ -0.53
USE1-203ENST00000593597 CDT1Q9H211 546 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 FOXP1Q9H334 677 aaPredicted RBP11.75□□□□□ -0.53
USE1-203ENST00000593597 PTPRHQ9HD43 1115 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 ARHGEF3Q9NR81 526 aa11.75□□□□□ -0.53
USE1-203ENST00000593597 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.75□□□□□ -0.53
USE1-203ENST00000593597 DNMT3BQ9UBC3 853 aaKnown RBP11.75□□□□□ -0.53
USE1-203ENST00000593597 SHISA7A6NL88 538 aa11.74□□□□□ -0.53
USE1-203ENST00000593597 E9PMD0 336 aa11.74□□□□□ -0.53
USE1-203ENST00000593597 HNRNPA1P09651 372 aaKnown RBP eCLIP11.74□□□□□ -0.53
USE1-203ENST00000593597 HOXA9P31269 272 aa11.74□□□□□ -0.53
USE1-203ENST00000593597 OR1D2P34982 312 aa11.74□□□□□ -0.53
USE1-203ENST00000593597 CCT6AP40227 531 aaKnown RBP11.74□□□□□ -0.53
USE1-203ENST00000593597 CREMQ03060 361 aa11.74□□□□□ -0.53
USE1-203ENST00000593597 ORC2Q13416 577 aaPredicted RBP11.74□□□□□ -0.53
USE1-203ENST00000593597 RAB33AQ14088 237 aa11.74□□□□□ -0.53
USE1-203ENST00000593597 UPP1Q16831 310 aa11.74□□□□□ -0.53
USE1-203ENST00000593597 SLC5A9Q2M3M2 681 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms