RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 ZNF280CQ8ND82 737 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 DYDC1Q8WWB3 177 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 ATP6V0A4Q9HBG4 840 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 BAIAP2L1Q9UHR4 511 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 DBR1Q9UK59 544 aaKnown RBP11.62□□□□□ -0.55
VPS4B-206ENST00000591475 TULP1O00294 542 aaPredicted RBP11.61□□□□□ -0.55
VPS4B-206ENST00000591475 PYGMP11217 842 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 STAT2P52630 851 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 TRAF1Q13077 416 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 CALCOCO2Q13137 446 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 RIPK1Q13546 671 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 VGLL4Q14135 290 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 ZYXQ15942 572 aaKnown RBP11.61□□□□□ -0.55
VPS4B-206ENST00000591475 CHADLQ6NUI6 762 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 CCDC25Q86WR0 208 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 ANKRD13AQ8IZ07 590 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 C12orf50Q8NA57 414 aaPredicted RBP11.61□□□□□ -0.55
VPS4B-206ENST00000591475 CD101Q93033 1021 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 STRA6Q9BX79 667 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 PTPN22Q9Y2R2 807 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 ZHX2Q9Y6X8 837 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 SMCHD1A6NHR9 2005 aa11.61□□□□□ -0.55
VPS4B-206ENST00000591475 ARHGEF35A5YM69 484 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 ANKRD63C9JTQ0 380 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 SPOPO43791 374 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 KIF1CO43896 1103 aaKnown RBP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 SNX3O60493 162 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 ECEL1O95672 775 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 GZMAP12544 262 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 IBSPP21815 317 aaPredicted RBP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 ATP5DP30049 168 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 VAMP7P51809 220 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 BACE1P56817 501 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 SF3A3Q12874 501 aaKnown RBP eCLIP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 SPP2Q13103 211 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 TTLL12Q14166 644 aaPredicted RBP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 EPC2Q52LR7 807 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 FAM133BQ5BKY9 247 aaKnown RBP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 ZNF746Q6NUN9 644 aaPredicted RBP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 CRELD2Q6UXH1 353 aaPredicted RBP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 SLC30A10Q6XR72 485 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 EXOC3L1Q86VI1 746 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 BANK1Q8NDB2 785 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 TCP11Q8WWU5 503 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 WDR11Q9BZH6 1224 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 NMRK2Q9NPI5 230 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 DONSONQ9NYP3 566 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 USP15Q9Y4E8 981 aaPredicted RBP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 ZNFX1Q9P2E3 1918 aaKnown RBP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 TCRBV7S2A1N4TA0A589 114 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 C19orf81C9J6K1 198 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 K7ENM7 598 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 PLA2G6O60733 806 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 HIP1RO75146 1068 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 OAS1P00973 400 aaKnown RBP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 CLTAP09496 248 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 RARAP10276 462 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 DLG4P78352 724 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 MTMR2Q13614 643 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 ALCAMQ13740 583 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 SIX1Q15475 284 aaPredicted RBP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 CCDC38Q502W7 563 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 RNF207Q6ZRF8 634 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 ZNF564Q8TBZ8 553 aaPredicted RBP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 CCHCR1Q8TD31 782 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 ZNF526Q8TF50 670 aaPredicted RBP11.6□□□□□ -0.55
VPS4B-206ENST00000591475 CHURC1Q8WUH1 139 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 SERPINB12Q96P63 405 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 PCDHB18PQ96TA0 734 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 TMEM206Q9H813 350 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 EHMT1Q9H9B1 1298 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 ABCF3Q9NUQ8 709 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 WHRNQ9P202 907 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 PRR12Q9ULL5 1215 aa11.6□□□□□ -0.55
VPS4B-206ENST00000591475 DOCK1Q14185 1865 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 UNCXA6NJT0 531 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 WDR46O15213 610 aaKnown RBP11.59□□□□□ -0.55
VPS4B-206ENST00000591475 SUN1O94901 812 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 SGPL1O95470 568 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 CFBP00751 764 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 CHRNB2P17787 502 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 RWDD2BP57060 319 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 PPP3CAQ08209 521 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 ZNF568Q3ZCX4 644 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 TBC1D1Q86TI0 1168 aaPredicted RBP11.59□□□□□ -0.55
VPS4B-206ENST00000591475 GBP7Q8N8V2 638 aaPredicted RBP11.59□□□□□ -0.55
VPS4B-206ENST00000591475 ZNF577Q9BSK1 485 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 NUP85Q9BW27 656 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 PLVAPQ9BX97 442 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 TEKT3Q9BXF9 490 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 CDC42EP4Q9H3Q1 356 aaKnown RBP11.59□□□□□ -0.55
VPS4B-206ENST00000591475 UNC45AQ9H3U1 944 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 PCIF1Q9H4Z3 704 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 LRRC19Q9H756 370 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 WRAP73Q9P2S5 460 aaPredicted RBP11.59□□□□□ -0.55
VPS4B-206ENST00000591475 NOCTQ9UK39 431 aaKnown RBP11.59□□□□□ -0.55
VPS4B-206ENST00000591475 FEM1BQ9UK73 627 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 AFG3L2Q9Y4W6 797 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 SNCAIPQ9Y6H5 919 aa11.59□□□□□ -0.55
VPS4B-206ENST00000591475 ATMINO43313 823 aaPredicted RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms