RNA–Protein interactions for RNA: ENST00000590096.1

ATG4D-212, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 1,282 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-212ENST00000590096 SLC11A1P49279 550 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 UBE3AQ05086 875 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 DSC1Q08554 894 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 STK4Q13043 487 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 KCNB1Q14721 858 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 BMT2Q1RMZ1 405 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 GLRA4Q5JXX5 417 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 NELFCDQ8IXH7 590 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 ELOA2Q8IYF1 753 aaPredicted RBP23.22■■□□□ 1.31
ATG4D-212ENST00000590096 COLGALT2Q8IYK4 626 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 SLC39A11Q8N1S5 342 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 TMEM169Q96HH4 297 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 RPF1Q9H9Y2 349 aaKnown RBP23.22■■□□□ 1.31
ATG4D-212ENST00000590096 RMND1Q9NWS8 449 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 FAN1Q9Y2M0 1017 aa23.22■■□□□ 1.31
ATG4D-212ENST00000590096 FAM189A1O60320 539 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 KIF20AO95235 890 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 POU3F3P20264 500 aaPredicted RBP23.21■■□□□ 1.31
ATG4D-212ENST00000590096 ADSSP30520 456 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 TNFSF9P41273 254 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 OR1G1P47890 313 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 PLCB3Q01970 1234 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 PPP2R3AQ06190 1150 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 TUSC3Q13454 348 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 ARMCX5Q6P1M9 558 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 ALKAL1Q6UXT8 129 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 KIAA0895Q8NCT3 520 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 SPPL3Q8TCT6 385 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 POF1BQ8WVV4 589 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 MRPL38Q96DV4 380 aaKnown RBP23.21■■□□□ 1.31
ATG4D-212ENST00000590096 CXCL16Q9H2A7 254 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 PLEKHA5Q9HAU0 1116 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 CNTN3Q9P232 1028 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 PUF60Q9UHX1 559 aaKnown RBP23.21■■□□□ 1.31
ATG4D-212ENST00000590096 MTCH2Q9Y6C9 303 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 PLXNA4Q9HCM2 1894 aa23.21■■□□□ 1.31
ATG4D-212ENST00000590096 SMIM28A0A1B0GU29 152 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 NRP1O14786 923 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 LDHAP00338 332 aaKnown RBP23.2■■□□□ 1.3
ATG4D-212ENST00000590096 HOXD13P35453 343 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 ACOT2P49753 483 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 SNRPFP62306 86 aaKnown RBP23.2■■□□□ 1.3
ATG4D-212ENST00000590096 SLC10A6Q3KNW5 377 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 XKR4Q5GH76 650 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 ZBTB41Q5SVQ8 909 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 HS2ST1Q7LGA3 356 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 MICALL1Q8N3F8 863 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 SMARCE1Q969G3 411 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 IGSF21Q96ID5 467 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 PPP1R10Q96QC0 940 aaKnown RBP23.2■■□□□ 1.3
ATG4D-212ENST00000590096 SLC38A7Q9NVC3 462 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 CPSF3Q9UKF6 684 aaKnown RBP23.2■■□□□ 1.3
ATG4D-212ENST00000590096 LZTS1Q9Y250 596 aa23.2■■□□□ 1.3
ATG4D-212ENST00000590096 PRG3Q9Y2Y8 225 aaPredicted RBP23.2■■□□□ 1.3
ATG4D-212ENST00000590096 TRANK1O15050 2925 aa23.19■■□□□ 1.3
ATG4D-212ENST00000590096 KIAA0391O15091 583 aaKnown RBP23.19■■□□□ 1.3
ATG4D-212ENST00000590096 CSPG5O95196 566 aa23.19■■□□□ 1.3
ATG4D-212ENST00000590096 KCNE1P15382 129 aa23.19■■□□□ 1.3
ATG4D-212ENST00000590096 ENOX2Q16206 610 aaKnown RBP23.19■■□□□ 1.3
ATG4D-212ENST00000590096 KNOP1Q1ED39 458 aaKnown RBP23.19■■□□□ 1.3
ATG4D-212ENST00000590096 NOC3LQ8WTT2 800 aaKnown RBP23.19■■□□□ 1.3
ATG4D-212ENST00000590096 FAM212AQ96EL1 285 aa23.19■■□□□ 1.3
ATG4D-212ENST00000590096 GSDMAQ96QA5 445 aa23.19■■□□□ 1.3
ATG4D-212ENST00000590096 CBWD1Q9BRT8 395 aa23.19■■□□□ 1.3
ATG4D-212ENST00000590096 COLEC11Q9BWP8 271 aa23.19■■□□□ 1.3
ATG4D-212ENST00000590096 PCIF1Q9H4Z3 704 aa23.19■■□□□ 1.3
ATG4D-212ENST00000590096 CASTOR2A6NHX0 329 aa23.18■■□□□ 1.3
ATG4D-212ENST00000590096 TIGD5Q53EQ6 642 aa23.18■■□□□ 1.3
ATG4D-212ENST00000590096 CD302Q8IX05 232 aa23.18■■□□□ 1.3
ATG4D-212ENST00000590096 SAAL1Q96ER3 474 aa23.18■■□□□ 1.3
ATG4D-212ENST00000590096 FAM213AQ9BRX8 229 aa23.18■■□□□ 1.3
ATG4D-212ENST00000590096 TLR9Q9NR96 1032 aa23.18■■□□□ 1.3
ATG4D-212ENST00000590096 CGNQ9P2M7 1197 aaKnown RBP23.18■■□□□ 1.3
ATG4D-212ENST00000590096 PCDHA5Q9Y5H7 936 aa23.18■■□□□ 1.3
ATG4D-212ENST00000590096 PRRC2BQ5JSZ5 2229 aaKnown RBP23.17■■□□□ 1.3
ATG4D-212ENST00000590096 TTC26A0AVF1 554 aa23.17■■□□□ 1.3
ATG4D-212ENST00000590096 TGFB1I1O43294 461 aa23.17■■□□□ 1.3
ATG4D-212ENST00000590096 POU5F1Q01860 360 aaKnown RBP23.17■■□□□ 1.3
ATG4D-212ENST00000590096 NAB2Q15742 525 aa23.17■■□□□ 1.3
ATG4D-212ENST00000590096 TMEM173Q86WV6 379 aaPredicted RBP23.17■■□□□ 1.3
ATG4D-212ENST00000590096 GPD1LQ8N335 351 aa23.17■■□□□ 1.3
ATG4D-212ENST00000590096 MAFAQ8NHW3 353 aaPredicted RBP23.17■■□□□ 1.3
ATG4D-212ENST00000590096 GOLGA5Q8TBA6 731 aa23.17■■□□□ 1.3
ATG4D-212ENST00000590096 ERCC4Q92889 916 aaPredicted RBP23.17■■□□□ 1.3
ATG4D-212ENST00000590096 UROC1Q96N76 676 aa23.17■■□□□ 1.3
ATG4D-212ENST00000590096 AGPAT3Q9NRZ7 376 aa23.17■■□□□ 1.3
ATG4D-212ENST00000590096 STK39Q9UEW8 545 aa23.17■■□□□ 1.3
ATG4D-212ENST00000590096 GTF3C5Q9Y5Q8 519 aaPredicted RBP23.17■■□□□ 1.3
ATG4D-212ENST00000590096 PDCD11Q14690 1871 aaKnown RBP23.17■■□□□ 1.3
ATG4D-212ENST00000590096 LACTBL1A8MY62 500 aa23.16■■□□□ 1.3
ATG4D-212ENST00000590096 MEFVO15553 781 aaPredicted RBP23.16■■□□□ 1.3
ATG4D-212ENST00000590096 XPOTO43592 962 aaKnown RBP23.16■■□□□ 1.3
ATG4D-212ENST00000590096 EXTL3O43909 919 aa23.16■■□□□ 1.3
ATG4D-212ENST00000590096 DNAJB1P25685 340 aa23.16■■□□□ 1.3
ATG4D-212ENST00000590096 HSP90AA2PQ14568 343 aaPredicted RBP23.16■■□□□ 1.3
ATG4D-212ENST00000590096 BMS1Q14692 1282 aaKnown RBP23.16■■□□□ 1.3
ATG4D-212ENST00000590096 DDX53Q86TM3 631 aaKnown RBP23.16■■□□□ 1.3
ATG4D-212ENST00000590096 SPATA20Q8TB22 786 aa23.16■■□□□ 1.3
ATG4D-212ENST00000590096 MICAL1Q8TDZ2 1067 aa23.16■■□□□ 1.3
ATG4D-212ENST00000590096 KIF12Q96FN5 646 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms