RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 ACO2Q99798 780 aaKnown RBP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 C2orf40Q9H1Z8 148 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 PTPRHQ9HD43 1115 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 TTC26A0AVF1 554 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 FAM189A1O60320 539 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 TSPAN1O60635 241 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 PARNO95453 639 aaKnown RBP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 FGBP02675 491 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 AFPP02771 609 aaKnown RBP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 PRKCBP05771 671 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 TPM2P07951 284 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 FECHP22830 423 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 PROZP22891 400 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 CASP14P31944 242 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 DLG4P78352 724 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 DEFB103AP81534 67 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 CDC42EP1Q00587 391 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 BFSP1Q12934 665 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 STRN3Q13033 797 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 PAK2Q13177 524 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 TFDP1Q14186 410 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 FAM187BQ17R55 369 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 FIGNQ5HY92 759 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 FKBP15Q5T1M5 1219 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 FAM109BQ6ICB4 259 aaPredicted RBP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 CNKSR3Q6P9H4 555 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 ZPBP2Q6X784 338 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 SRGAP1Q7Z6B7 1085 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 ZSCAN30Q86W11 494 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 CDR2LQ86X02 465 aaPredicted RBP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 ZBTB8OSQ8IWT0 167 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 POMGNT1Q8WZA1 660 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 CPB2Q96IY4 423 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 CAPN11Q9UMQ6 739 aa11.36□□□□□ -0.59
VPS4B-204ENST00000589604 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS4B-204ENST00000589604 CHD7Q9P2D1 2997 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 COL4A6Q14031 1691 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 AKR1B15C9JRZ8 316 aaPredicted RBP11.35□□□□□ -0.59
VPS4B-204ENST00000589604 INO80B-WBP1J3KQ70 363 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 ACKR2O00590 384 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 ENPP3O14638 875 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 MFAP3LO75121 409 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 TRIM49P0CI25 452 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 TRIM49CP0CI26 452 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 BMP8BP34820 402 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 LIG4P49917 911 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 WDR5P61964 334 aaKnown RBP11.35□□□□□ -0.59
VPS4B-204ENST00000589604 PDAP1Q13442 181 aaKnown RBP11.35□□□□□ -0.59
VPS4B-204ENST00000589604 SNRNP35Q16560 246 aaKnown RBP11.35□□□□□ -0.59
VPS4B-204ENST00000589604 MAPK6Q16659 721 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 ZBTB41Q5SVQ8 909 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 RPUSD2Q8IZ73 545 aaKnown RBP11.35□□□□□ -0.59
VPS4B-204ENST00000589604 ZNF710Q8N1W2 664 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 USP38Q8NB14 1042 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 CPLX3Q8WVH0 158 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 HERVK_113Q902F9 699 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 SEPT8Q92599 483 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 CCDC97Q96F63 343 aaPredicted RBP11.35□□□□□ -0.59
VPS4B-204ENST00000589604 BICD1Q96G01 975 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 CRACR2AQ9BSW2 395 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 INO80BQ9C086 356 aaPredicted RBP11.35□□□□□ -0.59
VPS4B-204ENST00000589604 UBE2OQ9C0C9 1292 aaKnown RBP11.35□□□□□ -0.59
VPS4B-204ENST00000589604 COLQQ9Y215 455 aaPredicted RBP11.35□□□□□ -0.59
VPS4B-204ENST00000589604 SZT2Q5T011 3432 aa11.35□□□□□ -0.59
VPS4B-204ENST00000589604 ESPNB1AK53 854 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 EXTL3O43909 919 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 PFKMP08237 780 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 ARF4P18085 180 aaPredicted RBP11.34□□□□□ -0.59
VPS4B-204ENST00000589604 SFPQP23246 707 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS4B-204ENST00000589604 FMO5P49326 533 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 VAMP7P51809 220 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 WNT7BP56706 349 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 APBA1Q02410 837 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 CYP24A1Q07973 514 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 PPP3CAQ08209 521 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 CAMK2BQ13554 666 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 TRIM14Q14142 442 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 CBWD6Q4V339 395 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 DCAF17Q5H9S7 520 aaPredicted RBP11.34□□□□□ -0.59
VPS4B-204ENST00000589604 CBWD3Q5JTY5 395 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 CBWD5Q5RIA9 395 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 UBXN11Q5T124 520 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 EEF1DP3Q658K8 133 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 SLFN12LQ6IEE8 588 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 PSRC1Q6PGN9 363 aaPredicted RBP11.34□□□□□ -0.59
VPS4B-204ENST00000589604 INTS8Q75QN2 995 aaKnown RBP11.34□□□□□ -0.59
VPS4B-204ENST00000589604 CATSPER4Q7RTX7 472 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 PPFIBP1Q86W92 1011 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 CRIPAKQ8N1N5 446 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 GPD1LQ8N335 351 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 TMC2Q8TDI7 906 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 PARD3BQ8TEW8 1205 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 PANX2Q96RD6 677 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 ADAM2Q99965 735 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 MRPL4Q9BYD3 311 aaKnown RBP11.34□□□□□ -0.59
VPS4B-204ENST00000589604 SIX2Q9NPC8 291 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 AGPAT5Q9NUQ2 364 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 AGO2Q9UKV8 859 aaKnown RBP11.34□□□□□ -0.59
VPS4B-204ENST00000589604 CITO14578 2027 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 CDH23Q9H251 3354 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms