RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 ARL5CA6NH57 179 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 ZNF233A6NK53 670 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 PTGESO14684 152 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 EXOC3O60645 756 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 POMCP01189 267 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 CXCL8P10145 99 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 NR2F2P24468 414 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 PBX2P40425 430 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 CASP4P49662 377 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 SCNN1GP51170 649 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 YARSP54577 528 aaKnown RBP9.32□□□□□ -0.92
NUP88-211ENST00000575976 WNT7BP56706 349 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 LRRC63Q05C16 580 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 TYRO3Q06418 890 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 SPAG1Q07617 926 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 PAK1Q13153 545 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 BTG3Q14201 252 aaPredicted RBP9.32□□□□□ -0.92
NUP88-211ENST00000575976 MYBPC2Q14324 1141 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 ENOX2Q16206 610 aaKnown RBP9.32□□□□□ -0.92
NUP88-211ENST00000575976 NFIL3Q16649 462 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 EDRF1Q3B7T1 1238 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 ZSCAN23Q3MJ62 389 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 XKR4Q5GH76 650 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 NOMO2Q5JPE7 1267 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 CEP135Q66GS9 1140 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 TTI2Q6NXR4 508 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 GLB1LQ6UWU2 654 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 ALKAL1Q6UXT8 129 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 LRRC55Q6ZSA7 311 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 CBWD2Q8IUF1 395 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 CMTR2Q8IYT2 770 aaKnown RBP9.32□□□□□ -0.92
NUP88-211ENST00000575976 XXYLT1Q8NBI6 393 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 GSTCDQ8NEC7 633 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 TMEM174Q8WUU8 243 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 FAM212AQ96EL1 285 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 EEF2KMTQ96G04 330 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 SNX27Q96L92 541 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 FBXL18Q96ME1 805 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 MED15Q96RN5 788 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 RPS6KC1Q96S38 1066 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 CDX2Q99626 313 aaPredicted RBP9.32□□□□□ -0.92
NUP88-211ENST00000575976 DUSP9Q99956 384 aaKnown RBP9.32□□□□□ -0.92
NUP88-211ENST00000575976 FUCA2Q9BTY2 467 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 PBX4Q9BYU1 374 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 TOPORSQ9NS56 1045 aaPredicted RBP9.32□□□□□ -0.92
NUP88-211ENST00000575976 ANO10Q9NW15 660 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 HCSTQ9UBK5 93 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 DACH1Q9UI36 760 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 YBX2Q9Y2T7 364 aaKnown RBP9.32□□□□□ -0.92
NUP88-211ENST00000575976 INSL6Q9Y581 213 aa9.32□□□□□ -0.92
NUP88-211ENST00000575976 TTC26A0AVF1 554 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 BICDL2A1A5D9 508 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 LACTBL1A8MY62 500 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 TULP1O00294 542 aaPredicted RBP9.31□□□□□ -0.92
NUP88-211ENST00000575976 CETN3O15182 167 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 INPPL1O15357 1258 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 AKAP3O75969 853 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 DDHD2O94830 711 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 ARHGEF15O94989 841 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 ADRB2P07550 413 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 RPL13P26373 211 aaKnown RBP9.31□□□□□ -0.92
NUP88-211ENST00000575976 FKBP3Q00688 224 aaKnown RBP9.31□□□□□ -0.92
NUP88-211ENST00000575976 POU5F1Q01860 360 aaKnown RBP9.31□□□□□ -0.92
NUP88-211ENST00000575976 ADAM9Q13443 819 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 SNRNP35Q16560 246 aaKnown RBP9.31□□□□□ -0.92
NUP88-211ENST00000575976 STX1AQ16623 288 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 TJAP1Q5JTD0 557 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 GLRA4Q5JXX5 417 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 C11orf57Q6ZUT1 292 aaPredicted RBP9.31□□□□□ -0.92
NUP88-211ENST00000575976 BRSK2Q8IWQ3 736 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 ZC3H3Q8IXZ2 948 aaKnown RBP9.31□□□□□ -0.92
NUP88-211ENST00000575976 URGCPQ8TCY9 931 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 SP7Q8TDD2 431 aaPredicted RBP9.31□□□□□ -0.92
NUP88-211ENST00000575976 ZMAT2Q96NC0 199 aaKnown RBP9.31□□□□□ -0.92
NUP88-211ENST00000575976 NKX2-4Q9H2Z4 354 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 NRDE2Q9H7Z3 1164 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 PLEKHA5Q9HAU0 1116 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 KIAA1586Q9HCI6 787 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 TBC1D13Q9NVG8 400 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 RBAKQ9NYW8 714 aaPredicted RBP9.31□□□□□ -0.92
NUP88-211ENST00000575976 CNTN3Q9P232 1028 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 KANSL3Q9P2N6 904 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 RWDD2AQ9UIY3 292 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 PLAGL2Q9UPG8 496 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 PCDHA11Q9Y5I1 949 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 COL4A6Q14031 1691 aa9.31□□□□□ -0.92
NUP88-211ENST00000575976 EYSQ5T1H1 3165 aa9.3□□□□□ -0.92
NUP88-211ENST00000575976 PRUNE2Q8WUY3 3088 aa9.3□□□□□ -0.92
NUP88-211ENST00000575976 SMIM28A0A1B0GU29 152 aa9.3□□□□□ -0.92
NUP88-211ENST00000575976 B4GALT3O60512 393 aa9.3□□□□□ -0.92
NUP88-211ENST00000575976 THP07101 528 aa9.3□□□□□ -0.92
NUP88-211ENST00000575976 CA3P07451 260 aa9.3□□□□□ -0.92
NUP88-211ENST00000575976 KCNE1P15382 129 aa9.3□□□□□ -0.92
NUP88-211ENST00000575976 ERCC5P28715 1186 aaPredicted RBP9.3□□□□□ -0.92
NUP88-211ENST00000575976 PSMC2P35998 433 aaKnown RBP9.3□□□□□ -0.92
NUP88-211ENST00000575976 SMAD3P84022 425 aaKnown RBP9.3□□□□□ -0.92
NUP88-211ENST00000575976 RNASELQ05823 741 aaKnown RBP9.3□□□□□ -0.92
NUP88-211ENST00000575976 PPP2R3AQ06190 1150 aa9.3□□□□□ -0.92
NUP88-211ENST00000575976 CYP24A1Q07973 514 aa9.3□□□□□ -0.92
NUP88-211ENST00000575976 NAB2Q15742 525 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms